RetrogeneDB ID: retro_mluc_2368

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430259:389622..389964(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000023714
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: MRPL17
• Ensembl ID: ENSMLUG00000001144
• Aliases: None
• Description: None

Sequence

>retro_mluc_2368
GGTCCAGAGTCCCTCATCTACCAGTTGTGGAGCTTGCTTACAGGACTGGTGCGATCCAAACATCAAGGCATCCTGAGCAC
GCATGGACGAGATATCTTGAAGGGTTATACTGAGAACCTCATCGACTATGGGAAGCTGGCAGACGCCAATGAAAGAGCCC
TGCACATGGCTGACTTCTGGCTCACAGAGAAGGACTTGATCCCAAAGCTATTTCAAGTGCTGGTCCCTCGGTACCAAGGT
CAGAATGGGGGCTACACGAGAATGCTGCAGATCCCAAATCAGAATAAGCAGGATCGGGCTAAGATGGCTGTGATCGAGTA
TAAAGGGAACTGCCTCCCACCC

Alignment

ORF - retro_mluc_2368 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 75.65 %
• Parental protein coverage: 65.7 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GPESRIHLLRNLLTGLVR--HERIEASWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPK
          GPES.I..L..LLTGLVR..H..I.....R.D...GY.E.LIDYGKL.D.NERA..MADFWLTEKDLIPK
Retrocopy GPESLIYQLWSLLTGLVRSKHQGILSTHGR-DILKGYTENLIDYGKLADANERALHMADFWLTEKDLIPK

Parental  LFQVLAPRYQGQSGGYTRMLQIPNRNQQDRAKMAVIEYKGNCLPP
          LFQVL.PRYQGQ.GGYTRMLQIPN.N.QDRAKMAVIEYKGNCLPP
Retrocopy LFQVLVPRYQGQNGGYTRMLQIPNQNKQDRAKMAVIEYKGNCLPP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2368 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Cavia porcellus	ENSCPOG00000027536	1 retrocopy	retro_cpor_1430,
Macropus eugenii	ENSMEUG00000013588	1 retrocopy	retro_meug_1822,
Myotis lucifugus	ENSMLUG00000001144	2 retrocopies	retro_mluc_2368 , retro_mluc_679,
Mustela putorius furo	ENSMPUG00000005449	1 retrocopy	retro_mputfur_125,
Rattus norvegicus	ENSRNOG00000019497	1 retrocopy	retro_rnor_1979,
Sus scrofa	ENSSSCG00000024693	1 retrocopy	retro_sscr_217,
Ictidomys tridecemlineatus	ENSSTOG00000003313	3 retrocopies	retro_itri_1019, retro_itri_1156, retro_itri_240,