RetrogeneDB ID: | retro_sscr_217 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 10:13430650..13431043(+) | ||
Located in intron of: | ENSSSCG00000010832 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL17 | ||
Ensembl ID: | ENSSSCG00000024693 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L17 [Source:HGNC Symbol;Acc:14053] |
Percent Identity: | 80.15 % |
Parental protein coverage: | 77.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | HERIEASWARVDELRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRFQGQNGGYTRML |
.ERIE.SWA.VDELRGY.EKLID.GKL.DTN..AMR.AD.W.TE.D.IPKLFQVLAP.F..Q.G.Y.RML | |
Retrocopy | YERIEVSWACVDELRGYTEKLIDSGKLEDTNK*AMRTADLWPTERDSIPKLFQVLAPGFHVQTGDYRRML |
Parental | QIPNRNEQDRAKMAVIEYKGNCLPPLPLPRRDSNLTLLNQLLQGLRQDQEASSHTAQTPAV |
QIPNRNEQDRA.MAVI.YKGNCLPPLPLPRRDSN.TLLNQLLQGL.Q.QEA.SHTAQTPA. | |
Retrocopy | QIPNRNEQDRARMAVIAYKGNCLPPLPLPRRDSNPTLLNQLLQGLQQNQEANSHTAQTPAI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 65 .44 RPM |
SRP014902_testis | 0 .14 RPM | 50 .92 RPM |
SRP018288_heart | 0 .00 RPM | 41 .31 RPM |
SRP018288_kidney | 0 .20 RPM | 49 .35 RPM |
SRP018288_liver | 0 .48 RPM | 23 .51 RPM |
SRP018288_lung | 0 .00 RPM | 28 .31 RPM |
SRP018856_adipose | 0 .38 RPM | 72 .12 RPM |
SRP035408_brain | 0 .00 RPM | 56 .76 RPM |
SRP035408_liver | 0 .06 RPM | 33 .03 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000027536 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013588 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000001144 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000005449 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000019497 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000024693 | 1 retrocopy |
retro_sscr_217 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000003313 | 3 retrocopies |