RetrogeneDB ID: retro_mluc_254

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429980:1310916..1311348(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000027385
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: BIRC5
• Ensembl ID: ENSMLUG00000006281
• Aliases: None
• Description: baculoviral IAP repeat containing 5 [Source:HGNC Symbol;Acc:593]

Sequence

>retro_mluc_254
ATGGCGGCCCGGTCGTTGCCCAAGCCCTGGCAGCACTACCTTCAAGACCACCGCCTCTCCACCTTCAAGCACTGGCCCTT
CCAGGAGGGCTGCGCCTGCACCCCCGAGCGGATGGCCGCGGCCGGCTTCGTCTACTGCCCCACGGAGAACGAGCCCGACT
TGGTCGAGTGTTTCTTCTGCTTCAAGGAGCTGGAAGGCTGGGAGCCAGGCGACGACCCCGCCGCGGAGCATCGGAAGCAC
TCGCCCGGTTGTGCTTTCCTGTCTCTCACGAAGCGGGTGGAAGAGCTGTCCGTCGGCGAATTTTTGGAACTGGACAAAGA
CAGAGCCAAGAACAGAATCATGAAGGAAGTCCACCGACAGCAGGAAGGACTGAAGGAAGCTGCGAAGAAGGTCCGCAGTG
CCATTGAGCGGCAGCTGGCCGACCCGGAGTGA

Alignment

ORF - retro_mluc_254 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 70.71 %
• Parental protein coverage: 98.59 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGAPSLPAAWQLYLKDHRVSTFKNWPFLEGCACTPERMAAAGFIHCPTENEPDLAQCFFCFKELEGWEPD
          M.A.SLP..WQ.YL.DHR.STFK.WPF.EGCACTPERMAAAGF..CPTENEPDL..CFFCFKELEGWEP.
Retrocopy MAARSLPKPWQHYLQDHRLSTFKHWPFQEGCACTPERMAAAGFVYCPTENEPDLVECFFCFKELEGWEPG

Parental  DDPLEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDKERAKNKVAKEANHKQKEFEEIAKKVRSAIEQLAA
          DDP..EH.KHS.GCAFLS..K..EEL..GEFL.LDK.RAKN...KE....Q....E.AKKVRSAIE...A
Retrocopy DDPAAEHRKHSPGCAFLSLTKRVEELSVGEFLELDKDRAKNRIMKEVHRQQEGLKEAAKKVRSAIERQLA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_254 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000013573	1 retrocopy	retro_btau_1347,
Cavia porcellus	ENSCPOG00000027390	1 retrocopy	retro_cpor_1355,
Equus caballus	ENSECAG00000008466	1 retrocopy	retro_ecab_100,
Myotis lucifugus	ENSMLUG00000006281	1 retrocopy	retro_mluc_254 ,
Macaca mulatta	ENSMMUG00000013767	1 retrocopy	retro_mmul_19,
Monodelphis domestica	ENSMODG00000001871	2 retrocopies	retro_mdom_307, retro_mdom_996,