RetrogeneDB ID: retro_mluc_2544

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL430830:11732..12233(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000008784
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ATP5D
• Ensembl ID: ENSMLUG00000015004
• Aliases: None
• Description: None

Sequence

>retro_mluc_2544
ATGCTGCCTGCCGCACTCTCCGCCGCCCTGGCCTGGGTCGCCTCGTGCGCCAGGCTCGCGCCTACGCCAAGGCCACCCCA
GCCCCAGCCCCTGCCGTGGGCCCGGGACAAGTGTCTTCCACCTTCGCCTCTCCCACACAGGTCTTCTTCAATGGTGCCAA
CGTCCAGCAGGTGGATGTGCCTACGCAGACAGGAGCCTTCAGTATCCTGGCAGCCCACGTGCCCACCCTGCAGGTCCCGT
GGCCAGGGTTGGTTGTTGTCCATGCTGAGGATGGCACCACCTCCAAATACTTCGTTAGCAGCGGCTCGGTCACAGTGAAC
GCTGATTCATCAGTTCAGTTACTGGCTGAAAAGGCTGTGCCGCTGGACATGCTGGATTTGGGGGCAGCCAAGGCAAACTT
GGAAAAGGCACAATCGAGCTGTCAGGGCATCCGACGAGGCCATGAGGGCTGAGATCCAAATCCGAACCGAGGCCAACGAA
GCCCTGGTGAAGGCTCTGGAG

Alignment

ORF - retro_mluc_2544 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 90.64 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MLPAAL-LRRSGLGRLVRQARAYAEAAAAPAPAAGPGQMSFTFASPTQVFFNGANVRQVDVPTQTGAFGI
          MLPAAL.LRR.GLGRLVRQARAYA.A..APAPA.GPGQ.S.TFASPTQVFFNGANV.QVDVPTQTGAF.I
Retrocopy MLPAAL<LRRPGLGRLVRQARAYAKATPAPAPAVGPGQVSSTFASPTQVFFNGANVQQVDVPTQTGAFSI

Parental  LAAHVPTLQVLRPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVPLDMLDLGAAKANLEKAQS
          LAAHVPTLQV..PGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAE.AVPLDMLDLGAAKANLEKAQS
Retrocopy LAAHVPTLQVPWPGLVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEKAVPLDMLDLGAAKANLEKAQS

Parental  -ELSG-ASDEAMRAEIQIRIEANEALVKALE
          .ELSG.ASDEAMRAEIQIR.EANEALVKALE
Retrocopy <ELSG<ASDEAMRAEIQIRTEANEALVKALE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_2544 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000002168	1 retrocopy	retro_acar_96,
Canis familiaris	ENSCAFG00000019536	1 retrocopy	retro_cfam_1372,
Myotis lucifugus	ENSMLUG00000015004	1 retrocopy	retro_mluc_2544 ,
Monodelphis domestica	ENSMODG00000005314	1 retrocopy	retro_mdom_1079,