RetrogeneDB ID: retro_mluc_62

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429776:15370980..15372369(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000022858
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000011757
• Aliases: None
• Description: None

Sequence

>retro_mluc_62
ATGGCTGCCACCGTGAACTTGGAATTTGATCCCATTTTTTTGAAAGCACTAGGCTTCTTACATTCAAAGAGTAAGGATTC
TGCTGAAAAGCTAAAAGCCTTACTTGATGAATCTTTGGCTCGGGGCATTGACTCAAGTTATCGTCCATCTCAAAAGGATG
TGGAGCCACCCAAAATTGCAAGCACAAAAACTATTTCCAGTAAGCAAGAGCCCAAAACATCATCCAGTCTTCCTCCTGGC
AATAATAATGGCAAGGTTCTCACAACTGAAAAGGTAAAGAAGGAAGCTGAGAAGAGACCTGCTGATAAAATGAAATCAGA
CACCACTGAAGGAGTTGACATTCCAAAGAAACCTAGATTGGAGAAACCAGAGACACGGTCCTCTCCCATTACCGTGCAAA
CCAGCAAGGATTTAGCTATGGCTGACCTTTCCAGTTTTGAGGAGACCAGTGCAGATGATTTTGCCATGGAGATGGGATTG
GCTTGTGTTGTTTGCAGGCAAATGACAGTGGCATCTGGTAATCAATTAGTAGAATGTCAAGAGTGCCATAACCTCTACCA
CCAAGATTGCCATAAGCCCCAAGTGACAGACAAGGAAGTGAATGACCCTCGCCTTGTGTGGTATTGTGCCCGATGTACCA
GACAAATGAAAAGAATGGCTCAAAAAACTCAGAAACCACCACAGAAACCAGCTCCCACAGTTGTTTCTGTCGCGCCCGCT
GTCAAAGATCCATTGGTTAAAAAACCAGAAACTAAACTCAAACAAGAGACAACTTTTCTAGCATTTAAGAGAACAGAAGT
CAAGACATCTGGGGTTATTTCAGGAAATTCTTCTAGCACCAGTGTTTCCTCTTCAGTAACTAGTGGCCTAACTGGATGGG
CAGCGTTTGCAGCCAAAACTACTTCTGCTGGTCCATCAACAGCAAAATTGAGTTCAACAACCCAAAACAATAGTGGGAAA
CCTGCTACCTCAGCAGCTAACCAGAAGCCTGTGGGTTTGACTGGTCTGGCAACATCATCCAAAGGTGGAATATGTTCCAA
ATTAGGTTCCAGTAACAACACTTCACCCACTGTACCATTGAAACCACCTCCACCTCTAACTTTGGGCAAAACTGGCCTTA
GTCGCTCAGTTAGTTGTGACAATGTTAGCAAAGTAGGTCTTCCTAGTCCAAGTAGTTTAGTTCCGGGAAGCAGCAGCCAA
CTAAGTGGAAATGGGAATAGTGGGACATCGGGGCCTAGCAGAAGTACCACCAGCAAAACCACTTCAGAATCAAGCAGCTC
TACCTCGGCATCCCTTAAAGGTCCAACTTCACATGAATCCCAGCTCAATGCCATGAAGCGATTACAGATGGTCAAGAAGA
AAGCTGCTCAAAAGAAACCCAAGAAATAA

Alignment

ORF - retro_mluc_62 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.84 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAATVNLELDPIFLKALGFLHSKSKDSAEKLKALLDESLARGIDSSYRPSQKDVEPPKIASTKTISSKQE
          MAATVNLE.DPIFLKALGFLHSKSKDSAEKLKALLDESLARGIDSSYRPSQKDVEPPKIASTKTISSKQE
Retrocopy MAATVNLEFDPIFLKALGFLHSKSKDSAEKLKALLDESLARGIDSSYRPSQKDVEPPKIASTKTISSKQE

Parental  PKTSSSLPSGNNNGKVLTTEKVKKEAEKRPADKMKSDTTEGVDIPKKPRLEKPETRSSPITVQTSRDLAM
          PKTSSSLP.GNNNGKVLTTEKVKKEAEKRPADKMKSDTTEGVDIPKKPRLEKPETRSSPITVQTS.DLAM
Retrocopy PKTSSSLPPGNNNGKVLTTEKVKKEAEKRPADKMKSDTTEGVDIPKKPRLEKPETRSSPITVQTSKDLAM

Parental  ADLSSFEETSADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCA
          ADLSSFEETSADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCA
Retrocopy ADLSSFEETSADDFAMEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCA

Parental  RCTRQMKKMAQKTQKPPQKPAPTVVSVAPAVKDPLVKKPETKLKQETTFLAFKRTEVKTSGVISGNSSST
          RCTRQMK.MAQKTQKPPQKPAPTVVSVAPAVKDPLVKKPETKLKQETTFLAFKRTEVKTSGVISGNSSST
Retrocopy RCTRQMKRMAQKTQKPPQKPAPTVVSVAPAVKDPLVKKPETKLKQETTFLAFKRTEVKTSGVISGNSSST

Parental  SVSSSVTSGLTGWAAFAAKTTSAGPSTAKLSSTTQNNSGKPATSAANQKPVGLTGLATSSKGGIGSKLGS
          SVSSSVTSGLTGWAAFAAKTTSAGPSTAKLSSTTQNNSGKPATSAANQKPVGLTGLATSSKGGI.SKLGS
Retrocopy SVSSSVTSGLTGWAAFAAKTTSAGPSTAKLSSTTQNNSGKPATSAANQKPVGLTGLATSSKGGICSKLGS

Parental  SNNTSPTVPLKPPPPLTLGKTGLSRSVSCDNVSKVGLPSPSSLVPGSSSQLSGNGNSGTSGPGGSTTSKT
          SNNTSPTVPLKPPPPLTLGKTGLSRSVSCDNVSKVGLPSPSSLVPGSSSQLSGNGNSGTSGP..STTSKT
Retrocopy SNNTSPTVPLKPPPPLTLGKTGLSRSVSCDNVSKVGLPSPSSLVPGSSSQLSGNGNSGTSGPSRSTTSKT

Parental  SSESSSSTSASLKGPTSQESQLNAMKRLQMVKKKAAQKKLKK
          .SESSSSTSASLKGPTS.ESQLNAMKRLQMVKKKAAQKK.KK
Retrocopy TSESSSSTSASLKGPTSHESQLNAMKRLQMVKKKAAQKKPKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_62 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000011569	1 retrocopy	retro_chof_2623,
Myotis lucifugus	ENSMLUG00000011757	1 retrocopy	retro_mluc_62 ,
Mustela putorius furo	ENSMPUG00000008999	1 retrocopy	retro_mputfur_1546,
Oryctolagus cuniculus	ENSOCUG00000011321	1 retrocopy	retro_ocun_416,