RetrogeneDB ID: retro_mputfur_1546

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897227.1:592957..594295(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: INTS12
• Ensembl ID: ENSMPUG00000008999
• Aliases: None
• Description: integrator complex subunit 12 [Source:HGNC Symbol;Acc:25067]

Sequence

>retro_mputfur_1546
GCACTAGGCTTCCTACATTCAAAGAGTAAGGATTCTGCAGAAAAGCTAAAGGCACTACTTGATGAATCTTTGGCTCGGGG
CATTGATGCAAGTTACCGTCCATCTCAGAAGGATGTAGAGCCACCCAAAATTTCAAGCGCAAAACCTGTTTCTGTTAAAC
AAGAGCCCCAAACATCATGCAGTCTTCTTTCTGGCAATAGCAATGGCGAGGCCCTCACAACTGAAAAAGTACAGACAGAA
GCGGAAAAGAGACCAGCGGATAAAATGGAACCAGACCTCACAGAAGGAGGTGATGCTCCAAAGAAACCTAGATTGGAGAA
ACCAGAGACACGGTCCTCTCCCGTTACCGTCCAAACTAGCAAGGATTTAGCCATGACTGACCTTTCCAGTTTTGAGGAGA
CTAGTGCCGACGGTTATACCATGGAGATGGGATTGGCCTGTGTTGTTTGTAGGCTAATGACACTGGCGTCCTGTGATCAG
TTAGAAGAACGTCAGGAGTGCCCTGATCTCCAGTACCAAGATGGCCGCGAGCCCCAGGCGACAGACAAGGAAGTGAATGA
CCCTCGTCCTGTGTGGAACTGTGCTCCATGAACCGGACAGATGAAAAGAATGGATCAAAAAACTCAGAAACCACCACAGA
AACCAGCCCCCACAGTCGCTCCTGTCGCTCCGGCTGTCAAAGAGCCATTGGTTAAGAAACTAGAAACTAAACTCAGAGAC
AACTTTTCTAGCATTTAAGAGAACAGAGGTCAAGACATCCACGGCTATGTCAGGAAATTCTTCTAGTCCCAGTGTTTCCT
CTTCAGGACCTAGTGGCCTAACTGGATGGGCAGCTTTTGCAGCTAAAACTTCCTTCTCTGCTCCATCCACAGCGAAACTG
AATTCAACAACCCAAAATAATAGTGGGAAGCCTGCGACCTCATCAGTTAACCAGAAGCCTGTGGGTTTAACTGGTCTGGC
GACATCATCTAAATGTGGAATAGGTTCCAAAACAGGTTCCACCTTCTGTTCCACTGCACCTTCCATTCCACTGAAACCAC
CTCCACCTCTAACTTTGGGCAAAACTGCCCTTAGCCGCTCCATTAGCTGTGACAATGTTAGCAAAGTGGATCTTCTAGTC
CAAGTAGTTTAGTTCCAGGAAGCACCAGCCAGCTCAGTGGGAACGGAAATAGTGGGACATCAGGGCCCAGGGGAAGTACC
ACTAGCAAAACCACTTCAGAATCAAGCAGCTCTCCCTCAGCATCCCTTAACGGTCTGACTTCACAAGAATCACAGCTCAA
TGCCATGAAGAGATTACAGATGGTCAAGAAGAAAGCTGTGCAGAAGAAACTCAAGAAG

Alignment

ORF - retro_mputfur_1546 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.33 %
• Parental protein coverage: 96.75 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  ALGFLHSKSKDSAEKLKALLDESLARGIDSSYRPSQKDVEPPKISSTKTISVKQEPKTSSSLPSANSNGK
          ALGFLHSKSKDSAEKLKALLDESLARGID.SYRPSQKDVEPPKISS.K..SVKQEP.TS.SL.S.NSNG.
Retrocopy ALGFLHSKSKDSAEKLKALLDESLARGIDASYRPSQKDVEPPKISSAKPVSVKQEPQTSCSLLSGNSNGE

Parental  ALTTEKVKKEAEKRPADKMKSDITEGVDIPKKPRLEKPETRSSPITVQTSKDLAMTDLSSFEETSADDFA
          ALTTEKV..EAEKRPADKM..D.TEG.D.PKKPRLEKPETRSSP.TVQTSKDLAMTDLSSFEETSAD...
Retrocopy ALTTEKVQTEAEKRPADKMEPDLTEGGDAPKKPRLEKPETRSSPVTVQTSKDLAMTDLSSFEETSADGYT

Parental  MEMGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQKTQK
          MEMGLACVVCR.MT.AS..QL.E.QEC..L..QD...PQ.TDKEVNDPR.VW.CA..T.QMKRM.QKTQK
Retrocopy MEMGLACVVCRLMTLASCDQLEERQECPDLQYQDGREPQATDKEVNDPRPVWNCAP*TGQMKRMDQKTQK

Parental  PPQKPAPTVVSVAPAVKDALVKKPETKLKQETTFLAFKR-TEVKTSTAISGNSSSTSVSSSVTSGLTGWA
          PPQKPAPTV..VAPAVK..LVKK.ETKL..........R.....T.......S.S.S..SS..SGLTGWA
Retrocopy PPQKPAPTVAPVAPAVKEPLVKKLETKLRDNFSSI*ENR>VKTSTAMSGNSSSPSVS--SSGPSGLTGWA

Parental  AFAAKTSSAGPSTAKLNSTTQNNSGKPATSSTNQKPVGLTGLATSSKGGIGSKIGSSNSTAPTVPLKPP-
          AFAAKTS...PSTAKLNSTTQNNSGKPATSS.NQKPVGLTGLATSSK.GIGSK.G.............P.
Retrocopy AFAAKTSFSAPSTAKLNSTTQNNSGKPATSSVNQKPVGLTGLATSSKCGIGSKTGXXXXXXXXXXXXKPP

Parental  PPLTLGKTGLSRSISCDNVSKV-GLPSPSSLVPGSTSQLIGNGNSGTSGPSGSTTSKTTSESSSSPSASL
          PPLTLGKT.LSRSISCDNVSKV.G..SPSSLVPGSTSQL.GNGNSGTSGP.GSTTSKTTSESSSSPSASL
Retrocopy PPLTLGKTALSRSISCDNVSKV<GSSSPSSLVPGSTSQLSGNGNSGTSGPRGSTTSKTTSESSSSPSASL

Parental  KGPTSQESQLNAMKRLQMVKKKAAQKKLKK
          .G.TSQESQLNAMKRLQMVKKKA.QKKLKK
Retrocopy NGLTSQESQLNAMKRLQMVKKKAVQKKLKK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1546 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1546 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000011569	1 retrocopy	retro_chof_2623,
Myotis lucifugus	ENSMLUG00000011757	1 retrocopy	retro_mluc_62,
Mustela putorius furo	ENSMPUG00000008999	1 retrocopy	retro_mputfur_1546 ,
Oryctolagus cuniculus	ENSOCUG00000011321	1 retrocopy	retro_ocun_416,