RetrogeneDB ID: retro_mluc_654

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429770:2139770..2140436(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ACAA2
• Ensembl ID: ENSMLUG00000022960
• Aliases: None
• Description: None

Sequence

>retro_mluc_654
GCTACGTACTTAGCAAGGCATGTTGGTTTTCAAGTGAGAATCCCAGCAGAGAACTTAGCTCTCACTGTTAACAGGCTTTG
TGGTCTGATTTTCAGCCCATTGTGACTGGATATTAGGAAGTTTGTATTAAAGGCACTGAAATTGTCTTGTGTGGAGAAGC
CAAAACACGAGCCAGACACCCTTCTGTGTCCGAAACCTGTGTATTAGAAACAAGTTTGTATTAAATCTCAAACTGGAAGA
TTGTTTGCGAGCAGCATTAGCAGCTCAGCATGTCAACTCCCCATGGGAATTCCTGCAGGGAATTTTGCTGCAGAAGATAA
AATAATCAGAGAAGAACATAATAAACATGCCCTGCAGTCACAGCAGAGGTGGAAAGATGCTAATGAGGCTGGTTTCTTTA
ATAATGAGATGGTATCAACTGAGGTGATGACAAGGAAGAGAGAAGTAGGCAATGCAAGTAGCTGGGCACGCTTGGTCCCA
AACAAGCCTGGGGCAGTGAAATAAACGTCCTCTAGGACTGAAGAAGGCAGGCACTGTCCCTGCAAGGGGTGCACCTGGGA
CATCTGATGCTTTCATAGCTAGAGAAGATCCTGTTCGAAAACAGAAGTTCACACCACTGGCCAGAATGATGGGCTATCTT
TGTCTGCATGCGATCCCACCTGCATG

Alignment

ORF - retro_mluc_654 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 55.17 %
• Parental protein coverage: 57.18 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  AAYLARHVGLRVGVPIETPALTLNRLCG-SGFQSVVSGCQEISVKAAEVVLCGG-TESMSQAPYCARNIR
          A.YLARHVG..V..P.E..ALT.NRLCG.S.FQ..V.G..E...K..E.VLCG......SQ.P.C.RN..
Retrocopy ATYLARHVGFQVRIPAENLALTVNRLCG<SDFQPIVTGY*EVCIKGTEIVLCGE<SQNTSQTPFCVRNLC

Parental  FGTKLGADLKLEDTLWAGLTDQHV-KLPMGITAENLAAQNKISREDCDKYALQSQQRWKAANDAGYFNSE
          ...K....LKLED.L.A.L..QHV..LPMGI.A.N.AA..KI.RE...K.ALQSQQRWK.AN.AG.FN.E
Retrocopy IRNKFVLNLKLEDCLRAALAAQHV<QLPMGIPAGNFAAEDKIIREEHNKHALQSQQRWKDANEAGFFNNE

Parental  MVPIEVKTRK-GKQTMQVDEHARPQTTLEQLNKLPPVFKKEGTVTAGNASGVSDGAGVVVIASEDAVKKH
          MV..EV.TRK..K..MQV..HA..QT.L.Q.NK.P...KK.GTV.A..A.G.SD......IA.ED.V.K.
Retrocopy MVSTEVMTRK>EK*AMQVAGHAWSQTSLGQ*NKRPLGLKKAGTVPARGAPGTSD----AFIAREDPVRKQ

Parental  NFTPLARVVGYFA-SGCDPSIM
          .FTPLAR..GY...S.CDP..M
Retrocopy KFTPLARMMGYLC<SACDPTCM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_654 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000009411	1 retrocopy	retro_amel_602,
Equus caballus	ENSECAG00000019394	1 retrocopy	retro_ecab_454,
Homo sapiens	ENSG00000167315	1 retrocopy	retro_hsap_4829,
Gorilla gorilla	ENSGGOG00000012552	1 retrocopy	retro_ggor_3011,
Myotis lucifugus	ENSMLUG00000022960	1 retrocopy	retro_mluc_654 ,
Nomascus leucogenys	ENSNLEG00000011576	1 retrocopy	retro_nleu_2706,
Ochotona princeps	ENSOPRG00000007567	2 retrocopies	retro_opri_1224, retro_opri_348,
Pan troglodytes	ENSPTRG00000010016	1 retrocopy	retro_ptro_3214,
Vicugna pacos	ENSVPAG00000012121	1 retrocopy	retro_vpac_625,