RetrogeneDB ID: retro_mluc_726

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429773:1270554..1271343(+)
• Located in intron of: ENSMLUG00000003123

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000015053
• Aliases: None
• Description: None

Sequence

>retro_mluc_726
ATGCCGCGCTCTTTCCTGTCAGGAAGTCTGCCTGCTCCTGCTGGAGGCCCAACTACAGCGAGCTGCAGACTCTTCTCCAG
AGTTCACCTTCCAGCAGCCCTACGACCAGGCCCACCTGCTGGCGGCCATCCCACCTCCTGAGGTCCTCAACCCCACGGCC
TCACTGCCCACGCTCATCTGGGACTCTCTCCTGGCACCACAAGCCCAGCCAATTGGCTGGGTCTCCCTTCTACCCCGGGA
GATCCCCAAGGTTGTTGAGCTGACCTCCCTGTTAGACGAGGACAGTAGGAAAGGCTCCCAGCCTCCCAGCCCACCCTCGC
TAGCCCCTTCCTCCTTCTCTTCCACCTCAGCCTCTTCCCTGGAGGCCGACGGTTATGCTGCCTTCCCGGGCTTGGGACCA
TTGCCCAAGCAGCTGTCTGGGCTCTCAGGGGCCAAGGACCCCTAGTCTTGCAAGGCCTTCAACTGCAAATACTGCAAAAA
GGAATACGTCAGCCTGGGTGCCCTCAAGATGCACGTCCGAAGCCACACCGCGCCCTGTGTCTGTGGCACCTGCGGGAAGG
CCTTCTCCAGGCCCTGGCTGCTATAGGGCCATGTCCAGACCCACACCGGGAGAAGCCCTTCTCCTGCTCCCACTGCAACT
GTGCTTTTGCTGACGGCTCCAACCTGCGGGCCCACCTCCAAACCCACTCAGATGTCAAGAAGTACCAGTACAAGACGTGC
TCCTGCACCTTCTCCCGCATGTTCCTGCTCCACAAACACCAAGAGTCAGGCTGCTCAGGGGGCCCCCGC

Alignment

ORF - retro_mluc_726 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.01 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MPRSFL-VRKSACSRRRPNYSELH-DSSPEFTFQQPYDQAHLLAAIPPPEVLNPTASLPTLIWDSLLAPQ
          MPRSFL.VRKSACS..RPNYSEL..DSSPEFTFQQPYDQAHLLAAIPPPEVLNPTASLPTLIWDSLLAPQ
Retrocopy MPRSFL<VRKSACSCWRPNYSELQ<DSSPEFTFQQPYDQAHLLAAIPPPEVLNPTASLPTLIWDSLLAPQ

Parental  AQPVGWASLLPREIPKVVELTSLSDEDSGKGSQPPSPPSPAPSSFSSTSASSLEADGYAAFPGLGPLPKQ
          AQP.GW.SLLPREIPKVVELTSL.DEDS.KGSQPPSPPS.APSSFSSTSASSLEADGYAAFPGLGPLPKQ
Retrocopy AQPIGWVSLLPREIPKVVELTSLLDEDSRKGSQPPSPPSLAPSSFSSTSASSLEADGYAAFPGLGPLPKQ

Parental  LSGLSGAKDPQSRKAFNCKYCNKEYVSLGALKMHIRSHTLPCVCGTCGKAFSRPWLLQGHVRTHTG-EKP
          LSGLSGAKDP.S.KAFNCKYC.KEYVSLGALKMH.RSHT.PCVCGTCGKAFSRPWLL.GHV.THTG.EKP
Retrocopy LSGLSGAKDP*SCKAFNCKYCKKEYVSLGALKMHVRSHTAPCVCGTCGKAFSRPWLL*GHVQTHTG<EKP

Parental  FSCSHCNRAFADRSNLRAHLQTHSDVKKYQCKTCSRTFSRMSLLHKHEESGCSGGPR
          FSCSHCN.AFAD.SNLRAHLQTHSDVKKYQ.KTCS.TFSRM.LLHKH.ESGCSGGPR
Retrocopy FSCSHCNCAFADGSNLRAHLQTHSDVKKYQYKTCSCTFSRMFLLHKHQESGCSGGPR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_726 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000000518	1 retrocopy	retro_cjac_2770,
Myotis lucifugus	ENSMLUG00000015053	2 retrocopies	retro_mluc_117, retro_mluc_726 ,
Macaca mulatta	ENSMMUG00000019719	1 retrocopy	retro_mmul_214,