RetrogeneDB ID: retro_mluc_754

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429774:14393688..14394643(+)
• Located in intron of: ENSMLUG00000007661

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TUBB4A
• Ensembl ID: ENSMLUG00000015607
• Aliases: None
• Description: None

Sequence

>retro_mluc_754
GTGAGGGAGATCATGAACCTGCAAGCCAGCCAGTGTGGCCACCAGAGCAGCGCTAAGTTCTGAGAGGTGATAAGCTATGA
GCATGGCATCAACTTTACGGGCACTTAACCATGGAAACAGTCACCTGCAGCTAGAACAGTTCAATGTGTACTACAATGAG
GCCACTGGTGGCAAGTACATGCCCCATGCTCTGCTCATGGACCTGGAGCTGGGCACCATGGACTCCATGTGCTTGTGGCC
CTTCCATCAGATCTTTAGGCTGGGCAACTTCATTTTTTGTCAGAGTGGTACCAGGAACAACTAGGCCAAGGGACACTACA
CAGATGATGTGGAGCTGGTTCACTTGGTGCTGGATGTGATGAGGAAAGAGGCTGCGAGCTGTGATCACCTGCAGTGCTTC
TGGTTGACCAACTCCCTGGGTAAGGGGACTGGGTCTGGTATGGGTACCCTCCTCATCAGTAGGACCAGGGAAGAGTACGT
TGACAGGATCATGAGCACCTTCAGCATGGTGGCCTCACCCAAGATGTTAAGATACCATGGTGGAACCCTCCAACGTCACC
TTCTCAGTACACCAGTTGCTAGAAAACACAGAGGAAACCTATTATATGGGTAAGAAGGCTTTCTATGATATGTGCTCCAG
AACCCTAAAGCCAACCACACCCACCTACAGTGGTCTGAACCACCGGGTGACAGCCATCATGAGTGAGCACACCACCTTCC
TGCGATTTCCTGGCCTGCTCAATGCTGACCTTCCCAAAATGGATGTCAACATGGTGCCCTTCCCCCACCCACACTTTTTC
ATGCCCAGCTTTGCCCCCAAACAGCCAGGGTATCCAGCACTATGGGTGCTGACGGTCCCTGAGCTCATCCAGCAGATCAT
TCATGCCAAGAACACAATGATTGCCTGTGACCTCCACATGGCCATTATATACTGTGGCCACATGTCCATGAAGGA

Alignment

ORF - retro_mluc_754 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.91 %
• Parental protein coverage: 71.85 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGT-YHGDSDLQLERINVYYNEATGGNYVPRAVLVDLE
          .REI..LQA.QCG.Q..AKF.EVIS.EHGI..TGT..HG.S.LQLE..NVYYNEATGG.Y.P.A.L.DLE
Retrocopy VREIMNLQASQCGHQSSAKF*EVISYEHGINFTGT>NHGNSHLQLEQFNVYYNEATGGKYMPHALLMDLE

Parental  PGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSL
          .GTMDS....PF.QIFR..NF.F.QSG..NN.AKGHYT...ELV..VLDV.RKEA.SCD.LQ.F.LT.SL
Retrocopy LGTMDSMCLWPFHQIFRLGNFIFCQSGTRNN*AKGHYTDDVELVHLVLDVMRKEAASCDHLQCFWLTNSL

Parental  GGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVS-DTVVEPYNATLSVHQLVENTDETYCIDNEALY
          G.GTGSGMGTLLIS..REE..DRIM.TFS.V.SPK...DT.VEP.N.T.SVHQL.ENT.ETY.....A.Y
Retrocopy GKGTGSGMGTLLISRTREEYVDRIMSTFSMVASPKML>DTMVEPSNVTFSVHQLLENTEETYYMGKKAFY

Parental  DICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS
          D.C.RTLK.TTPTY..LNH.V.A.MS..TT.LRFPG.LNADL.K..VNMVPFP..HFFMP.FAP....G.
Retrocopy DMCSRTLKPTTPTYSGLNHRVTAIMSEHTTFLRFPGLLNADLPKMDVNMVPFPHPHFFMPSFAP-KQPGY

Parental  QQYRALTVPELTQQMFDAKNMMAACD-PRHGRYLTVAAVFRG
          .....LTVPEL.QQ...AKN.M.ACD.P.HG.Y.....V..G
Retrocopy PALWVLTVPELIQQIIHAKNTMIACD<PPHGHYILWPHVHEG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_754 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000104833	1 retrocopy	retro_hsap_4751,
Myotis lucifugus	ENSMLUG00000015607	1 retrocopy	retro_mluc_754 ,
Myotis lucifugus	ENSMLUG00000016179	1 retrocopy	retro_mluc_401,
Mustela putorius furo	ENSMPUG00000006958	1 retrocopy	retro_mputfur_1255,