RetrogeneDB ID: retro_mputfur_1255

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL897056.1:1808656..1809557(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000006958
• Aliases: None
• Description: None

Sequence

>retro_mputfur_1255
AGGAAGATCTTGCCCCTCCAGGCCAGCCAGTGCAGAAACCAGATCCGCGCCAAATTCGGAAGGTCATCAGCGACAAGCAT
GGCATCGACATTGCCAGCATTTACCACAGTGAGAGTGATCCGAAGCTGGAGCAGATCGAGTACTCCAAGAACACCGCCGG
CGGCAACTGCGTGCCCTGCACTGTGCTTGTGGACCTGGAGCTGGGCACTATGGTCTCCCTGTGCTTGGGACCCTTTGGGC
AAATCTTCAGACAACATGGCTTCCGGTCAGAGTTACACAGAACAGTGGGCCAAGGGGCACTACACAGAGGGTGAAGAGCT
GATCAACTCTGGGCTGGAAGTTGTGAGGAAAAAATGTTAAATCTGTGACTGCCTGCAGGGTTTCCAGCTGACCCACTCCC
CAGGTAGGGTGACTGAGCCTGGGATGGGTACCCTTTTCATCAGCAATATTGGGGAGGTGTGCCCAGACGGGATCATGAAC
ACATTCAGTGTGGCGCCCTCAAGCAACTGGTGGGACAGGGTGGTGGAGCCCTATGATGTCATGCTCTCAGCCCACTGGCT
CATAGATAACCCAGACTGAAAGCTATTGGATTGATAACAAGGCCCCCTATGACATCTGCTTTGGAACTTTGAAACTGACC
ACACCCACCCATGGGGACGACAACCACCTGGTGTCAGCCACCATGAGTGGGGTCACCAGATGCCTGCCTTTTCCTGGACA
GCTCAATGCTGACCCATACAAGCTGGCTATCAATAGGGTCCTTTGCCCCTGACTGCAATTCTGCATGCCCGGCTTCACCC
CACTGACCAGCTGGAGCAGCCAACAGTACATGGCGCTGACAGTGGCCAAGCTCACCCAGCACGTGTTTGATGCCAAGAAC
ATTACAGCCACTACCTGACCG

Alignment

ORF - retro_mputfur_1255 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.89 %
• Parental protein coverage: 68.47 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  REIVHLQAGQCGNQIGAKFW-EVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGNYVPRAVLVDLEP
          R.I..LQA.QC.NQI.AKF...VISD.HGID....YH..SD..LE.I..Y.....GGN.VP..VLVDLE.
Retrocopy RKILPLQASQCRNQIRAKFG<KVISDKHGIDIASIYHSESDPKLEQIE-YSKNTAGGNCVPCTVLVDLEL

Parental  GTMDSVRSG-PFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDAVLDVVRKEAESCDCLQGFQLTHSL
          GTM.S...G.P.G.....DN...GQS.....WAKGHYTEG.EL....L.VVRK....CDCLQGFQLTHS.
Retrocopy GTMVSLCLG>PLGK--SSDNMASGQSYT-EQWAKGHYTEGEELINSGLEVVRKKC*ICDCLQGFQLTHSP

Parental  GGGTGSGMGTLLISKIREEFPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTD-ETYCIDNEALY
          G..T..GMGTL.IS.I.E..PD.IMNTFSV.PS....D.VVEPY...LS.H.L..N.D.E.Y.IDN.A.Y
Retrocopy GRVTEPGMGTLFISNIGEVCPDGIMNTFSVAPSSNWWDRVVEPYDVMLSAHWLIDNPD>ESYWIDNKAPY

Parental  DICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS
          DICF.TLKLTTPT.GD.NHLVSATMSGVT.CL.FPGQLNAD..KLA.N.V..P.L.F.MPGF.PLTS..S
Retrocopy DICFGTLKLTTPTHGDDNHLVSATMSGVTRCLPFPGQLNADPYKLAINRVLCP*LQFCMPGFTPLTSWSS

Parental  QQYRALTVPELTQQMFDSKNMMAACDP
          QQY.ALTV..LTQ..FD.KN..A...P
Retrocopy QQYMALTVAKLTQHVFDAKNITATT*P

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_1255 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_1255 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000104833	1 retrocopy	retro_hsap_4751,
Myotis lucifugus	ENSMLUG00000015607	1 retrocopy	retro_mluc_754,
Mustela putorius furo	ENSMPUG00000006958	1 retrocopy	retro_mputfur_1255 ,
Mustela putorius furo	ENSMPUG00000011690	3 retrocopies	retro_mputfur_1123, retro_mputfur_607, retro_mputfur_807,