RetrogeneDB ID: retro_mluc_834

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429778:2432623..2434044(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000026220
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000012432
• Aliases: None
• Description: None

Sequence

>retro_mluc_834
ATGGTGCAGCATGACTTTGTTCCTGCTTGGCTAAATTTTTCAACACCACAGGCAGGTAAGTTGCCTACACCCACCTTTGA
AAAACACGGAGAGCACCTACCCCGAGGAAATGGTAGATTTGGAGTAAGCCGTCATCAACATAATTCTTCTGATGGCTTTT
TTAACAATAGACTTCTACGAACTACAGGAGATTCCTGGCACCAACCCTCCCTGTTTCGCCATGATTCTGTGGTCTCGGGT
GTCTCTAAGGGAACATATGCTGGAATCACAGGAAACCTATCTGGTTGGCATGGCTCTTCCCGTGGTCATAATGGCATGAA
CCAGCGCAGTGGGGGTGGCGCAGGAAACCATCGACACTGGAATGGCAACTTTCACTTCTGGAAAGGCTGTGCTTTCAGGA
AAAGCCACCTGCAGAGATTATGGAAGAAAGGAAAGAAGACAAGGTGGAAAAGTTGCAGTTTGAAGAGGAAGACTTCCCTT
CCTTGAATCCAGAAGCTGGCAAACAGAATCAGCCATGCAGACCTATCGGGACCCCTTCTGGAGTGTGGAAAAACCCACCT
GGTGCCAAACAACCCTCCAAAATGCTAGCTATGAAAAAAGTTTCCAAAGAAGATCCTGCTGCTGCCTTCTCTGCTGCATT
CACCTCACCAGGATCTCACTATGCAAATGGGAACAAATCATCCAACATGGTTCCAAGTGTCTATAAGAACCTGGTTCCTA
AGCCTGCACCACCTCCTTCCAAGCCCAGTGCATGGAAAGCTAACAGAATGGAACACAAATCAGGATCCCTTTCCTCTAGC
CAGGAGTCTGCTTTTACCCGTCTAATCTCTGTTACCAAACCAGTAGTACTGGCTGGTGGTGCAGTTTTAAGTTCTCCCAA
AGAGAGTCCCTCCAGCACCACTCCTCCCATTGAGATCAGCTCCTCTCGTCTGACCAAGTTGACCCGCCGAACCACCTATA
GGAAAAGCAAGTTTCTGAAGACTCTGAAGGATAACCAGAATGGAGACTTCTCAGAGAACAGAGATTGTGACAAGCTGGAG
GATTTGGAGGACAACAGCACACCTGAACCAAAGGAAAATGGAGAGGAAGGCTGTCATCAGAAAGGTCTCCCTCTCCCTGC
AGAGGAGGAAGGGGAGGTCCTCTCACACTCACTGGAGGCAGAGCACAGGTTATTGAAAGCAATGGGATGGCAGGAGTATC
CTGAAAATGATGAGAATTACCTTCCCCTCACAGAGGATGAGCTTGAAGAGTTCCATATGAAGACAGAGCAGCTGAGAAGA
AATGGCTTTGGGAAGAATGGCTTCTTGCAAAGCCGCACTTCTAGCATATTCTCCCCTTGGAGAAGTACGAGCAAAGCAGA
GTTTGAGTATTCAGACACAGAAACCAGTAGCAGTGAAACATCAGATGACGATACCTGGAAG

Alignment

ORF - retro_mluc_834 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.79 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAQHDFVPAWLNFSTPQAVKSPTATFEKHGEHLPRGDGRFGVSRRRHNSSDGFFNNGPLRTTGDSWHQPS
          M.QHDFVPAWLNFSTPQA.K.PT.TFEKHGEHLPRG.GRFGVSR..HNSSDGFFNN..LRTTGDSWHQPS
Retrocopy MVQHDFVPAWLNFSTPQAGKLPTPTFEKHGEHLPRGNGRFGVSRHQHNSSDGFFNNRLLRTTGDSWHQPS

Parental  LFRHDSVDSGVSKGAYAGITGNLSGWHGSSRGHDGMSQRSGGGTGNHRHWNGSFHSRKGCAF-QEKPPAE
          LFRHDSV.SGVSKG.YAGITGNLSGWHGSSRGH.GM.QRSGGG.GNHRHWNG.FH..KGCAF.QEKPPAE
Retrocopy LFRHDSVVSGVSKGTYAGITGNLSGWHGSSRGHNGMNQRSGGGAGNHRHWNGNFHFWKGCAF<QEKPPAE

Parental  IREERKEEKVEKLQFEEEDFPSLNPEAGKQNQPCRPIGTPSGVWENPPGAKQTSKMLVIKKVSKEDPAAT
          I.EERKE.KVEKLQFEEEDFPSLNPEAGKQNQPCRPIGTPSGVW.NPPGAKQ.SKML..KKVSKEDPAA.
Retrocopy IMEERKEDKVEKLQFEEEDFPSLNPEAGKQNQPCRPIGTPSGVWKNPPGAKQPSKMLAMKKVSKEDPAAA

Parental  FSAAFTSPGSHYANGNKSSNMVPSVYKNLVPKPAPPPSKPSAWKANRMEHKSGSLSSSRESAFTSPISVT
          FSAAFTSPGSHYANGNKSSNMVPSVYKNLVPKPAPPPSKPSAWKANRMEHKSGSLSSS.ESAFT..ISVT
Retrocopy FSAAFTSPGSHYANGNKSSNMVPSVYKNLVPKPAPPPSKPSAWKANRMEHKSGSLSSSQESAFTRLISVT

Parental  KPVVLAGGAVLSSPKESPSSTTPPIEISSSRLTKLTRRTTDRKSEFLKTLKDDRNGDFSENRDCDKLEDL
          KPVVLAGGAVLSSPKESPSSTTPPIEISSSRLTKLTRRTT.RKS.FLKTLKD..NGDFSENRDCDKLEDL
Retrocopy KPVVLAGGAVLSSPKESPSSTTPPIEISSSRLTKLTRRTTYRKSKFLKTLKDNQNGDFSENRDCDKLEDL

Parental  EDNSTPEPKENGEEGCHQNGLPLPVEEEGEVLSHSLEAEHRLLKAMGWQEYPENDENYLPLTEDELKEFH
          EDNSTPEPKENGEEGCHQ.GLPLP.EEEGEVLSHSLEAEHRLLKAMGWQEYPENDENYLPLTEDEL.EFH
Retrocopy EDNSTPEPKENGEEGCHQKGLPLPAEEEGEVLSHSLEAEHRLLKAMGWQEYPENDENYLPLTEDELEEFH

Parental  MKTEQLRRNGFGKNGFLQSRTSSLFSPWRSTCKAEFEDSDTETSSSETSDDDAWK
          MKTEQLRRNGFGKNGFLQSRTSS.FSPWRST.KAEFE.SDTETSSSETSDDD.WK
Retrocopy MKTEQLRRNGFGKNGFLQSRTSSIFSPWRSTSKAEFEYSDTETSSSETSDDDTWK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_834 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 12 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000010454	1 retrocopy	retro_chof_53,
Microcebus murinus	ENSMICG00000008449	1 retrocopy	retro_mmur_164,
Myotis lucifugus	ENSMLUG00000007462	1 retrocopy	retro_mluc_155,
Myotis lucifugus	ENSMLUG00000012432	2 retrocopies	retro_mluc_211, retro_mluc_834 ,
Mus musculus	ENSMUSG00000034042	2 retrocopies	retro_mmus_1391, retro_mmus_405,
Oryctolagus cuniculus	ENSOCUG00000017939	1 retrocopy	retro_ocun_427,
Otolemur garnettii	ENSOGAG00000004134	1 retrocopy	retro_ogar_1859,
Ochotona princeps	ENSOPRG00000001584	1 retrocopy	retro_opri_928,
Rattus norvegicus	ENSRNOG00000037595	1 retrocopy	retro_rnor_390,
Sorex araneus	ENSSARG00000004852	1 retrocopy	retro_sara_242,
Ictidomys tridecemlineatus	ENSSTOG00000013491	1 retrocopy	retro_itri_243,
Tursiops truncatus	ENSTTRG00000012202	1 retrocopy	retro_ttru_1355,