RetrogeneDB ID: retro_mluc_883

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429780:13311450..13312107(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PARL
• Ensembl ID: ENSMLUG00000004507
• Aliases: None
• Description: None

Sequence

>retro_mluc_883
TGGTGGAATAACCTAAGTGATGGCCAGCGGACTGTTGATAGGTATTTTAGCTGTAAATGCTTTTGTATTCTGTTTATGGA
GAGCACCTTCTTTACAGCGGGGAATGATCAGATATTTCACATCCAGTCCAGCCTCAAAGGACCTTTGTTCTCCAATTTTG
ATGTCTACATTCAGTCATTTCTCCTTGTTTCATATGCAACAAACATGTATGTTTTGTGGTACTTCTCCTCCAGCATAGTG
AATATCCTGGGTCAAGAGCAGTTCATGGTGGTGTACTTATCTTCAGGTGTTATTTCCAATTTTTTCAGTTATGTGTGTAA
AGTGCCTACAGGAAGACATGGACCATCACTTGGAGCATCAGGCGCAATCATGATGGTCCTTGCAGCTGTCTGCACTAAGA
TCCCAGAAGGGATGCTCGCCATTATCTCTCTTCCAATGTTCACGTTTGCCACAGGGAATGCCCTAAAAGCCATTATTGAT
AAGGATATAGCAGGAATGATCCTGGGATGGACATGTTTTGATCATGAAGCACATCTTGGGGGAGCTCTCTTTGGAATATG
GTATATTACTTATGGTCATGAACTCATTTGGAAGAACAGGGAGGCTCTAGTGAAAATTTGGCATGAAATGAGGACTGATG
GCCCCAAAAAAGGAGGG

Alignment

ORF - retro_mluc_883 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.07 %
• Parental protein coverage: 57.94 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  WWNNLSDGQRTVT-GIIAANVFVFCLWRVPSLQRGMIRYFTSNPASKVLCSPMLLSTFSHFSLFHM-AAN
          WWNNLSDGQRTV..GI.A.N.FVFCLWR.PSLQRGMIRYFTS.PASK.LCSP.L.STFSHFSLFHM.A.N
Retrocopy WWNNLSDGQRTVD>GILAVNAFVFCLWRAPSLQRGMIRYFTSSPASKDLCSPILMSTFSHFSLFHM<ATN

Parental  MYVLWSFSSSIVNILGQEQFMAVYLSAGVISNFVSYVCKVATGRYGPSLGASGAIMTVLAAVCTKIPDGR
          MYVLW.FSSSIVNILGQEQFM.VYLS.GVISNF.SYVCKV.TGR.GPSLGASGAIM.VLAAVCTKIP.G.
Retrocopy MYVLWYFSSSIVNILGQEQFMVVYLSSGVISNFFSYVCKVPTGRHGPSLGASGAIMMVLAAVCTKIPEGM

Parental  LAIIFLPMFTFTAGTALKAIIAMDTAGMILGWKFFDHAAHLGGALFGIWYITYGHELIWKNREPLVKIWH
          LAII.LPMFTF..G.ALKAII..D.AGMILGW..FDH.AHLGGALFGIWYITYGHELIWKNRE.LVKIWH
Retrocopy LAIISLPMFTFATGNALKAIIDKDIAGMILGWTCFDHEAHLGGALFGIWYITYGHELIWKNREALVKIWH

Parental  EMRTNGPKKGG
          EMRT.GPKKGG
Retrocopy EMRTDGPKKGG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_883 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Dipodomys ordii	ENSDORG00000014935	1 retrocopy	retro_dord_315,
Myotis lucifugus	ENSMLUG00000004507	1 retrocopy	retro_mluc_883 ,
Mus musculus	ENSMUSG00000033918	2 retrocopies	retro_mmus_1882, retro_mmus_3526,
Oryctolagus cuniculus	ENSOCUG00000007882	1 retrocopy	retro_ocun_541,
Pongo abelii	ENSPPYG00000014338	2 retrocopies	retro_pabe_2290, retro_pabe_2912,
Ictidomys tridecemlineatus	ENSSTOG00000023222	1 retrocopy	retro_itri_380,