RetrogeneDB ID: | retro_mmul_1266 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 16:57445958..57446254(-) | ||
Located in intron of: | ENSMMUG00000010588 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.1618 | ||
Ensembl ID: | ENSMMUG00000019763 | ||
Aliases: | None | ||
Description: | protein DEK [Source:RefSeq peptide;Acc:NP_001244457] |
Percent Identity: | 86.14 % |
Parental protein coverage: | 50.51 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | VKSANVKKADSSTTKKNQNSSKKESESEDSSDDEPLIKKLKKPPTDEELKETI-KKLLASANLEEVTMKQ |
VKS.NVKKAD.STTKKNQNSSKKESESEDSSDDEPLIKKLKKPPTDEELKETI.K.L....NLEEVTMKQ | |
Retrocopy | VKSVNVKKADGSTTKKNQNSSKKESESEDSSDDEPLIKKLKKPPTDEELKETI<KLLASA-NLEEVTMKQ |
Parental | ICKKVYENYPTYDLTERKDFIKT-TVKELIS |
ICKKVYENYPTYDLT...DFI.T..VKELIS | |
Retrocopy | ICKKVYENYPTYDLTXXXDFI*TANVKELIS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 4 .82 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 4 .28 RPM |
SRP007412_cerebellum | 0 .00 RPM | 8 .39 RPM |
SRP007412_heart | 0 .00 RPM | 4 .24 RPM |
SRP007412_kidney | 0 .12 RPM | 5 .99 RPM |
SRP007412_liver | 0 .00 RPM | 1 .31 RPM |
SRP007412_testis | 0 .00 RPM | 1 .47 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000010184 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000018188 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004470 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019763 | 2 retrocopies |
retro_mmul_1266 , retro_mmul_2627,
|
Oryctolagus cuniculus | ENSOCUG00000003869 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000007750 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000001075 | 1 retrocopy |