RetrogeneDB ID: | retro_mmul_1519 | ||
Retrocopy location | Organism: | Rhesus macaque (Macaca mulatta) | |
| Coordinates: | 2:79070133..79071194(-) | ||
| Located in intron of: | ENSMMUG00000031881 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | ISG20L2 | ||
| Ensembl ID: | ENSMMUG00000000037 | ||
| Aliases: | None | ||
| Description: | interferon-stimulated 20 kDa exonuclease-like 2 [Source:RefSeq peptide;Acc:NP_001244602] |
Retrocopy-Parental alignment summary:
>retro_mmul_1519
ATGTCTACTTTACTGCTCAATCTGGATTTTGGGGAACCTCCTCCCAAAAAGGCATTAGAAGGAAATGCCAAGCACTGAAA
TTTTGTCAAGAAGCGGAGGCTCTTAGAACGGAGAGGCTTTCTGAGTAAAAAGAACCAACCCCCTAGCAAGGCGCCTAAGT
TGCACTCTGAACCTCCAAAGAAAGGGGAAGCTCCTACAGTGGATGGCACTTGAAGACCCCTTCCTTCCCAAAAAGAAGAA
GACAGCTGCCTCTAGCAATGGGTCAGGACAGCCCCTGGACAAGAAAGCTGCAGTGTCTTGGCTGATCCCTGCCCCTTCAA
AAAAGGCTGATTCTGTTGCTGCTAAAGTAGATTTGCTGGGGGAGTTCCAGAGTGCCCTTCCAAAGATCAATAGTCACCCA
ACCTGCTCTCAGAAGAAGGGCTCCCAGAAGAAATCCTCTAAGAAGAACCATCCTCAGAAGAATGCCCCACAGAACTCCAC
CCAAGCTCATTCAGAGAATAAATGCTCCGGAATATCCCAGAAGTTGCCACAGAAGATGGTGGCAATTGACTGTGAGATGG
TGGGCACAGGATCAAAGGGGCATGTTAGTTCCTTGGCTCAATGTAGCATTGTCAACTACAATGGAGATGTGCTTTATGAC
GAGTACATTCTTTCCCCCTGCCACATTGTGGACTACCGAACCAGATGGAGTGGTATCCGGAAGCACCACGTGGTGAATGC
CACACCCTTCAAGATTGCTCGAGGCCAGATCTTGAAGATACTCACAGGGAAGACAGTGGTGGGACATGCCATCCACAATG
ACTTCAAAGCCCTTCAGTACTTTCACCCCAAGTCCCTCACCTGTGACACCTCCCATAGCACCCCCCTCAACCTGGAAGGC
TCACTGCCCGGAGAATGCCACCATGTCTCTGAAGCATCTCACCAAGAAGCTGCTAAACTGGGATATCCAGGTTGGGAAGA
GTGGACATTCCTCTGTGGAAGATGCCCAGGCCACCGTGGAGCTGTACAAGTTGGTTGAAGTCGAGTGGGAAGAGCACCTA
GCCCAGAATCCCCCTAAAGAC
ORF - retro_mmul_1519 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 93.28 % |
| Parental protein coverage: | 100.0 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | MSTLLLNLDFGEPPPKKALEGNAKHRNFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPPKKGETPMVDGT |
| MSTLLLNLDFGEPPPKKALEGNAKH.NFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPPKKGE.P.VDGT | |
| Retrocopy | MSTLLLNLDFGEPPPKKALEGNAKH*NFVKKRRLLERRGFLSKKNQPPSKAPKLHSEPPKKGEAPTVDGT |
| Parental | -WKTPSFPK-KKKTAACSNGSGQPLDKKAAVSWLTPAPSKKADSVAAKVDLLGEFQSALPKINSHPTRSQ |
| ..KTPSFPK.KKKTAA.SNGSGQPLDKKAAVSWL.PAPSKKADSVAAKVDLLGEFQSALPKINSHPT.SQ | |
| Retrocopy | <LKTPSFPK<KKKTAASSNGSGQPLDKKAAVSWLIPAPSKKADSVAAKVDLLGEFQSALPKINSHPTCSQ |
| Parental | KKGSQKKSSKKNHPQKNAPQNSTQAHSENKCSRISQKLPQKMVAIDCEMVGTGPKGHVSSLARCSIVNYN |
| KKGSQKKSSKKNHPQKNAPQNSTQAHSENKCS.ISQKLPQKMVAIDCEMVGTG.KGHVSSLA.CSIVNYN | |
| Retrocopy | KKGSQKKSSKKNHPQKNAPQNSTQAHSENKCSGISQKLPQKMVAIDCEMVGTGSKGHVSSLAQCSIVNYN |
| Parental | GDVLYDEYILPPCHIVDYRTRWSGIRKQHMVNATPFKIARGQILKILTGKIVVGHAIHNDFKALQYFHPK |
| GDVLYDEYIL.PCHIVDYRTRWSGIRK.H.VNATPFKIARGQILKILTGK.VVGHAIHNDFKALQYFHPK | |
| Retrocopy | GDVLYDEYILSPCHIVDYRTRWSGIRKHHVVNATPFKIARGQILKILTGKTVVGHAIHNDFKALQYFHPK |
| Parental | SLTRDTSHIPPLNR-KADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYKLVEVEWEEHL |
| SLT.DTSH..PLN..KA.CPENATMSLKHLTKKLLN.DIQVGKSGHSSVEDAQAT.ELYKLVEVEWEEHL | |
| Retrocopy | SLTCDTSHSTPLNL>KAHCPENATMSLKHLTKKLLNWDIQVGKSGHSSVEDAQATVELYKLVEVEWEEHL |
| Parental | AQNPPKD |
| AQNPPKD | |
| Retrocopy | AQNPPKD |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
| Library | Retrocopy expression | Parental gene expression |
|---|---|---|
| SRP007412_brain | 0 .00 RPM | 15 .01 RPM |
| SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 15 .63 RPM |
| SRP007412_cerebellum | 0 .00 RPM | 19 .63 RPM |
| SRP007412_heart | 0 .06 RPM | 8 .07 RPM |
| SRP007412_kidney | 0 .12 RPM | 12 .79 RPM |
| SRP007412_liver | 0 .04 RPM | 11 .52 RPM |
| SRP007412_testis | 0 .87 RPM | 382 .66 RPM |
Macaca mulatta was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmul_1519 retrocopy.
Macaca mulatta was not studied using FANTOM5 data.
retro_mmul_1519 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_mmul_1519 has 0 orthologous retrocopies within eutheria group .Parental genes homology:
Parental genes homology involve 4 parental genes, and 5 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Felis catus | ENSFCAG00000006559 | 1 retrocopy | |
| Macaca mulatta | ENSMMUG00000000037 | 1 retrocopy |
retro_mmul_1519 ,
|
| Nomascus leucogenys | ENSNLEG00000012742 | 1 retrocopy | |
| Rattus norvegicus | ENSRNOG00000011402 | 2 retrocopies |