RetrogeneDB ID: retro_nleu_3048

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397620.1:273430..274492(-)
• Located in intron of: ENSNLEG00000010270

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ISG20L2
• Ensembl ID: ENSNLEG00000012742
• Aliases: None
• Description: None

Sequence

>retro_nleu_3048
ATGTCTACTTTACTGCTCAATCTGGATTTTGGGGAACCTCCTCCCAAAAAGGCATTAGAAGGAAATGCCAAGCACCGAAA
TTCTGTCAAGAAGTGGAGGCTTTTAGAATGGAGAGGCTTTCTGAGTAAAAAGAACCAACCCCCTAGCAAGGCGCCTAAGT
TGCACTCTGAATCTCCAAAGAAAGGGGAAACTCCTACGGTGGATGGCACTTGGAAGACCCCTTCCTTCCCAAAAAAGAAG
AAGACAGCTGCCTCCAGCAATGGGTCAGGACAGCCCCTGGACAAGAAAGCTGCAGTGTCTTGGTTGACCCCTGCCCCTTC
AAAAAAGGCTGATTCTGTTGCTGCTAAAGTAGATTTGCTGGGGGAGTTCCAGAGTGCCCTTCCAAAGATCAATAGCCACC
CAACCCACTCTCAGAAGAAGAGCTCCCAGAAGAAATCCTCTAAAAAGAACCGTCCTCAGAAGAATGCCCCACAGAACTCC
ACCCAAGCTCATTCGGAGAATAAGTGTTCCGGAGCATCCCAGAAGTTGCCACGGAAGATGGTGGCAATTGACTGTGAGAT
GGTGGGCACAGGACCAAAGGGGCATGTTAGTTCCTTGGCTCGATGTAGCATTGTCAACTACAACGGAGATGTGCTTTATG
ACGAGTACATTCTTCCCCCCTGCCACATTGTGGACTACCGAACCAGGTGGGGTGGTATCCGGAAGCAGCACATGGTGAAT
GCCACACCCTTCAAGATTGCTCAAGGCCAGATCTTGAAGATACTTGCAGGGAAGACAGTGGTGGGGCATGCCATCCACAA
CGACTTCAAAGCCCTTCAGTACTTTCACCCCAAGTCCCTCACCCGTGACACCTCCCATATCCCCCACCTCAACCAGAAGA
CTGACTGCCCGGAGAATGCCACCATATCTCTGAAGCATCTCACCAAGAAGCTGCTAAACTGGGATATCCAGGTTGGGAAG
AGCGGACATTCCTCTGTGGAAGATGCCCAGGCCACCATGGAGCTGTACAAGTTGGTTGAAGTTGAGTGGGAAGAGCACCT
AGCCCAGAATCCCCCTACAGAC

Alignment

ORF - retro_nleu_3048 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.35 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSTLLLNLDFGEPPPKKALEGNAKHRNFVRKRRLLERRGFLSKKNQPPSKAPKLHSEPPKKGETLTVDGT
          MSTLLLNLDFGEPPPKKALEGNAKHRN.V.K.RLLE.RGFLSKKNQPPSKAPKLHSE.PKKGET.TVDGT
Retrocopy MSTLLLNLDFGEPPPKKALEGNAKHRNSVKKWRLLEWRGFLSKKNQPPSKAPKLHSESPKKGETPTVDGT

Parental  WKTPSFPKKKKTAASSNGSGQPLDKKAAVSWLTPAPSKKADSVAAKVDLLGEFQSAFPKIDSHPTRSQKK
          WKTPSFPKKKKTAASSNGSGQPLDKKAAVSWLTPAPSKKADSVAAKVDLLGEFQSA.PKI.SHPT.SQKK
Retrocopy WKTPSFPKKKKTAASSNGSGQPLDKKAAVSWLTPAPSKKADSVAAKVDLLGEFQSALPKINSHPTHSQKK

Parental  SSQKKSSKKNRPQKNAPQNSTQAHSENKRSGASQKLPQKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGD
          SSQKKSSKKNRPQKNAPQNSTQAHSENK.SGASQKLP.KMVAIDCEMVGTGPKGHVSSLARCSIVNYNGD
Retrocopy SSQKKSSKKNRPQKNAPQNSTQAHSENKCSGASQKLPRKMVAIDCEMVGTGPKGHVSSLARCSIVNYNGD

Parental  VLYDEYILPPCHIVDYRTRWSGIRKQHMVNATPFKIARGQILKILAGKIVVGHAIHNDFKALQYFHPKSL
          VLYDEYILPPCHIVDYRTRW.GIRKQHMVNATPFKIA.GQILKILAGK.VVGHAIHNDFKALQYFHPKSL
Retrocopy VLYDEYILPPCHIVDYRTRWGGIRKQHMVNATPFKIAQGQILKILAGKTVVGHAIHNDFKALQYFHPKSL

Parental  TRDTSHIPPLNRKADCPENATMSLKHLTKKLLNRDIQVGKSGHSSVEDAQATMELYKLVEVEWEEHLARN
          TRDTSHIP.LN.K.DCPENAT.SLKHLTKKLLN.DIQVGKSGHSSVEDAQATMELYKLVEVEWEEHLA.N
Retrocopy TRDTSHIPHLNQKTDCPENATISLKHLTKKLLNWDIQVGKSGHSSVEDAQATMELYKLVEVEWEEHLAQN

Parental  PPTD
          PPTD
Retrocopy PPTD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_3048 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000006559	1 retrocopy	retro_fcat_1999,
Macaca mulatta	ENSMMUG00000000037	1 retrocopy	retro_mmul_1519,
Nomascus leucogenys	ENSNLEG00000012742	1 retrocopy	retro_nleu_3048 ,
Nomascus leucogenys	ENSNLEG00000013130	1 retrocopy	retro_nleu_2930,
Rattus norvegicus	ENSRNOG00000011402	2 retrocopies	retro_rnor_2836, retro_rnor_463,