RetrogeneDB ID: | retro_mmul_1520 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:88326898..88327134(-) | ||
Located in intron of: | ENSMMUG00000020954 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB1 | ||
Ensembl ID: | ENSMMUG00000022428 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.5 % |
Parental protein coverage: | 76.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LARVAVALGLGVPVGTEAAAIMVNLLQIVRDHWVHVLVPMGFVIGCYLDRKNDERLTAFRNKSALFKREL |
.A....ALGLGV.VGTEAAAIMVNLLQIVRDHWVHVL.P.GFVIGCYLDRK.DE.LT.FRNKS.LFKREL | |
Retrocopy | VAGFPIALGLGVAVGTEAAAIMVNLLQIVRDHWVHVLAPVGFVIGCYLDRKSDEWLTTFRNKSTLFKREL |
Parental | RPNE-EVTWK |
RP.E.EVTWK | |
Retrocopy | RPSE<EVTWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 41 .68 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 39 .43 RPM |
SRP007412_cerebellum | 0 .06 RPM | 46 .04 RPM |
SRP007412_heart | 0 .00 RPM | 97 .04 RPM |
SRP007412_kidney | 0 .00 RPM | 70 .19 RPM |
SRP007412_liver | 0 .00 RPM | 47 .70 RPM |
SRP007412_testis | 0 .08 RPM | 18 .85 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014837 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018067 | 5 retrocopies | |
Homo sapiens | ENSG00000183648 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000022428 | 2 retrocopies |
retro_mmul_1520 , retro_mmul_538,
|
Nomascus leucogenys | ENSNLEG00000017129 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000012731 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000006076 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006649 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000015319 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008130 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000003502 | 2 retrocopies |