RetrogeneDB ID: | retro_vpac_257 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_3389:1035171..1035420(+) | ||
Located in intron of: | ENSVPAG00000008821 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NDUFB1 | ||
Ensembl ID: | ENSVPAG00000003502 | ||
Aliases: | None | ||
Description: | NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa [Source:HGNC Symbol;Acc:7695] |
Percent Identity: | 81.93 % |
Parental protein coverage: | 79.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PPAPLAGLAAALALGVVVTSEAAAFMMSLLQVVRDHWVHILVPMGFVFGWYLDKKNDEKLTAFRNESLLF |
P.APLAGLAAAL..GVV..SEAAAF..S.LQ.VRDHWVHILVP.GFVFGWYLDKKND.KL.AF.N.SLLF | |
Retrocopy | PLAPLAGLAAALGRGVVLGSEAAAFVLSSLQAVRDHWVHILVPVGFVFGWYLDKKNDIKLIAFQNKSLLF |
Parental | KRELRPREEVTWK |
KRELRP.EEVTWK | |
Retrocopy | KRELRPHEEVTWK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000014837 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000018067 | 5 retrocopies | |
Homo sapiens | ENSG00000183648 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000022428 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017129 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000012731 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000006076 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006649 | 2 retrocopies | |
Pteropus vampyrus | ENSPVAG00000015319 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008130 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000003502 | 2 retrocopies |
retro_vpac_257 , retro_vpac_39,
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