RetrogeneDB ID: | retro_mmul_2644 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:141334280..141334770(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | mml-mir-762-3 | ||
Ensembl ID: | ENSMMUG00000003225 | ||
Aliases: | None | ||
Description: | mml-mir-762-1 [Source:miRBase;Acc:MI0012548] |
Percent Identity: | 92.07 % |
Parental protein coverage: | 67.36 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | AGRTVRAETRSRAKDDIKKVMATIEKVRRWEKRWVTVGDTSLRIFKWVPVVDPQEEERRRAGGGAERSRG |
AGRTVRAETRSRA.DDIKKVMATIEKVRR..K..VTVGDTSLRIFK.VPVVDPQEEERRRAGGGA.RSRG | |
Retrocopy | AGRTVRAETRSRAEDDIKKVMATIEKVRR*KKQ*VTVGDTSLRIFK*VPVVDPQEEERRRAGGGAKRSRG |
Parental | RERRGRGASPRGGGPLILLDLNDENSNQSFHSEGSLQKGTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPP |
RER.GRGASPRGGGPLILLDLNDENSNQSFHSEGSLQKGTEPSPGGTPQPSRPVSPAGPPEGVPE.AQPP | |
Retrocopy | RERWGRGASPRGGGPLILLDLNDENSNQSFHSEGSLQKGTEPSPGGTPQPSRPVSPAGPPEGVPEKAQPP |
Parental | RLGQERD-PGGITAGSTDEPPMLT |
RLGQE...PGGITAGSTDE.PMLT | |
Retrocopy | RLGQEKN>PGGITAGSTDETPMLT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 2 .47 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 9 .84 RPM |
SRP007412_cerebellum | 0 .00 RPM | 2 .26 RPM |
SRP007412_heart | 0 .00 RPM | 9 .13 RPM |
SRP007412_kidney | 0 .00 RPM | 7 .28 RPM |
SRP007412_liver | 0 .00 RPM | 5 .11 RPM |
SRP007412_testis | 0 .00 RPM | 30 .46 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000007604 | 2 retrocopies | |
Bos taurus | ENSBTAG00000008412 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000016715 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000001676 | 1 retrocopy | |
Equus caballus | ENSECAG00000000482 | 1 retrocopy | |
Felis catus | ENSFCAG00000029090 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000003225 | 13 retrocopies | |
Mustela putorius furo | ENSMPUG00000011988 | 1 retrocopy |