RetrogeneDB ID: | retro_mmul_302 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:22110124..22110577(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000032498 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.9723 | ||
Ensembl ID: | ENSMMUG00000015278 | ||
Aliases: | None | ||
Description: | coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial [Source:RefSeq peptide;Acc:NP_001185668] |
Percent Identity: | 97.99 % |
Parental protein coverage: | 98.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RGSRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTAAGVAVGSAV |
R..RSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTAAGVAVGSAV | |
Retrocopy | RVPRSRTSRMAPPASRAPQMRAAPRPAPVAQPPAAAPPSAVGSSAAAPRQPGLMAQMATTAAGVAVGSAV |
Parental | GHTLGHAITGGFSGGSNAEPASPDITYQEPQGTQLPQQQQPCFYEIKQFLECAQNQGDIKLCEGFNEVLK |
GHTLGHAITGGFSGGSNAEPASPDITYQEPQGTQL.QQQQPCFYEIKQFLECAQNQGDIKLCEGFNEVLK | |
Retrocopy | GHTLGHAITGGFSGGSNAEPASPDITYQEPQGTQLAQQQQPCFYEIKQFLECAQNQGDIKLCEGFNEVLK |
Parental | QCRLANGLA |
QCRLANGLA | |
Retrocopy | QCRLANGLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 5 .83 RPM | 33 .05 RPM |
SRP007412_brain_prefrontal_cortex | 35 .06 RPM | 46 .73 RPM |
SRP007412_cerebellum | 6 .33 RPM | 21 .83 RPM |
SRP007412_heart | 9 .13 RPM | 34 .92 RPM |
SRP007412_kidney | 6 .92 RPM | 24 .18 RPM |
SRP007412_liver | 29 .69 RPM | 33 .25 RPM |
SRP007412_testis | 3 .69 RPM | 10 .40 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016050 | 2 retrocopies | |
Bos taurus | ENSBTAG00000040295 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000010178 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000021267 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000012857 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000008598 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015151 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000015278 | 2 retrocopies |
retro_mmul_160, retro_mmul_302 ,
|
Mus musculus | ENSMUSG00000070493 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000010097 | 5 retrocopies | |
Sus scrofa | ENSSSCG00000007743 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000010512 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000012905 | 15 retrocopies | |
Tursiops truncatus | ENSTTRG00000015185 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000006104 | 1 retrocopy |