RetrogeneDB ID: | retro_btau_768 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 19:50009744..50010203(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000007354 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CHCHD9 | ||
Ensembl ID: | ENSBTAG00000040295 | ||
Aliases: | CHCHD2, CHCHD9 | ||
Description: | coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial [Source:RefSeq peptide;Acc:NP_001029918] |
Percent Identity: | 96.73 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPRGSRSRTSRVAPPASRAPQMRAAPRPAPAAQPPAMAPPSAVGSPAAAPRQPGLMAQMATTAAGVAVGS |
MPRGSRSRTS.VAPPASRAPQMRAAPRPAPAAQ.PAMAPPSAVGSPAAAPRQP.LMAQ.ATTAAGVAVGS | |
Retrocopy | MPRGSRSRTSHVAPPASRAPQMRAAPRPAPAAQSPAMAPPSAVGSPAAAPRQPDLMAQVATTAAGVAVGS |
Parental | AVGHTLGHAITGGFSGGSSAEPSRPDITYQEPQGTQPAQLQQNGPCFYEVKQFLECAQSQGDLKLCEGFS |
AVGHTLGHAITGGF.GGSSAEPSRPDITYQEPQGTQPAQLQQNGPCFYEVKQFLECAQSQGDLKLCEGFS | |
Retrocopy | AVGHTLGHAITGGFGGGSSAEPSRPDITYQEPQGTQPAQLQQNGPCFYEVKQFLECAQSQGDLKLCEGFS |
Parental | EVLKQCRLANGLA |
EVLKQCRLANGLA | |
Retrocopy | EVLKQCRLANGLA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 45 .20 RPM |
ERP005899_muscle | 0 .37 RPM | 177 .53 RPM |
SRP017611_brain | 0 .14 RPM | 43 .08 RPM |
SRP017611_kidney | 0 .24 RPM | 126 .37 RPM |
SRP017611_liver | 0 .00 RPM | 43 .87 RPM |
SRP030211_testis | 0 .14 RPM | 41 .14 RPM |