RetrogeneDB ID: | retro_mmul_510 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:91718357..91718780(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.873 | ||
Ensembl ID: | ENSMMUG00000022101 | ||
Aliases: | None | ||
Description: | cold-inducible RNA-binding protein [Source:RefSeq peptide;Acc:NP_001248245] |
Percent Identity: | 51.39 % |
Parental protein coverage: | 71.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKS |
A...GKLF.GGL...TNE..LE.VF.KYG.I.EV...KDRET..SRGF.FVTFE...DAKDA...MNGKS | |
Retrocopy | ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDMNGKS |
Parental | VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGNRFESRSGGYGGSRDY |
.DG..I.V.QA.K.S..R.R.........RG..RG.R..GRG.S..GG.RG..........GGY...... | |
Retrocopy | LDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFRA-GRGGS--GGTRGPPSRGGHMDDGGYSMHFNM |
Parental | YSSR |
.SSR | |
Retrocopy | SSSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 7 .84 RPM | 112 .83 RPM |
SRP007412_brain_prefrontal_cortex | 6 .43 RPM | 121 .14 RPM |
SRP007412_cerebellum | 7 .68 RPM | 163 .83 RPM |
SRP007412_heart | 7 .36 RPM | 153 .16 RPM |
SRP007412_kidney | 6 .57 RPM | 121 .36 RPM |
SRP007412_liver | 1 .82 RPM | 85 .22 RPM |
SRP007412_testis | 4 .15 RPM | 184 .81 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Gadus morhua | ENSGMOG00000012137 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000015007 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000022101 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000011049 | 1 retrocopy |