RetrogeneDB ID: retro_mluc_1975

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429971:2313322..2313838(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CIRBP
• Ensembl ID: ENSMLUG00000015007
• Aliases: None
• Description: None

Sequence

>retro_mluc_1975
ATGGCATCAGATGAAGGCAAGCTTTTCGTTGGAGGGTTGAGTTTTGACACCAATGAGCAGTCGCTGGAGCAGGTCTTCTC
AAAATATGGACATATTTCTGAAGTGGTGGTCGTGAAAGACAGGGAGACCCAGCGGTCACGGGGCTTTGGGTTTGTCACCT
TTGAGAACATCGACGATGCCAAAGATGCAATGATGGCCATGAATGGGAAGTCTGTGGACGGGTGACAGATTCGAGTTGAC
CAGGCTGGCAAGTCATCTGATAACCGATCCCGTGGGTACCGAGGTGGCTCTGCTGGGGGCCGGGGCTTCTTCCGTGGGGG
CCGAGGCCGGGGCCGTGGTTTCTCCAGAGGAGGAGGGGACCGAGGCTATGGGGGGAGCCGGTTCGAGTCCAGAAGTGGGG
GCTATGGGGGCTCCAGAGACTACTACAGCAGCCGGAGTCAGGGTGGTGGCTACGGTGACCGGAGCTCTGGAGGGTCCTAT
AGAGACAGCTACGACAGTTATGCTACACACAACAAG

Alignment

ORF - retro_mluc_1975 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.26 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK
          MASDEGKLFVGGLSFDTNEQSLEQVFSKYG.ISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK
Retrocopy MASDEGKLFVGGLSFDTNEQSLEQVFSKYGHISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGK

Parental  SVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGSRFESRSGGYGGSRD
          SVDG.QIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGSRFESRSGGYGGSRD
Retrocopy SVDG*QIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRGRGRGFSRGGGDRGYGGSRFESRSGGYGGSRD

Parental  YYSSRSQGGGYGDRSSGGSYRDSYDSYATHNE
          YYSSRSQGGGYGDRSSGGSYRDSYDSYATHN.
Retrocopy YYSSRSQGGGYGDRSSGGSYRDSYDSYATHNK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_1975 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Gadus morhua	ENSGMOG00000012137	1 retrocopy	retro_gmor_4,
Myotis lucifugus	ENSMLUG00000003996	1 retrocopy	retro_mluc_1013,
Myotis lucifugus	ENSMLUG00000005781	2 retrocopies	retro_mluc_2565, retro_mluc_2567,
Myotis lucifugus	ENSMLUG00000013209	5 retrocopies	retro_mluc_1630, retro_mluc_1746, retro_mluc_203, retro_mluc_2180, retro_mluc_80,
Myotis lucifugus	ENSMLUG00000015007	1 retrocopy	retro_mluc_1975 ,
Macaca mulatta	ENSMMUG00000022101	4 retrocopies	retro_mmul_1101, retro_mmul_2077, retro_mmul_510, retro_mmul_677,
Tursiops truncatus	ENSTTRG00000011049	1 retrocopy	retro_ttru_756,