RetrogeneDB ID: | retro_mmul_696 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1099214729183:3993..4738(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.3939 | ||
Ensembl ID: | ENSMMUG00000020928 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.38 % |
Parental protein coverage: | 85.67 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 2 |
Parental | TSGVVYVGHLPNLLNETQIFSYFSQF-GTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLF |
.SGVVYV.HL.NLLN.TQI.SY.SQ..GTVTRFRL.R.K..GNSKGYAFVEF.S.D.A.IVAETMNNYLF | |
Retrocopy | SSGVVYVCHLHNLLNKTQILSYVSQLQGTVTRFRLFRNKSPGNSKGYAFVEFKSKDFAEIVAETMNNYLF |
Parental | GERLLECHFMPPEKVHKELFKDWNIPFKQPSHPSVK-RYNRN-RTLTQKLRMEERFKKKERLLRKKLAKK |
GERLLE.HFM.PEKV.KELF..WNIPFKQPS.PSVK..YN.N...LTQKL.MEE.FK.K..LL.KKLA.K | |
Retrocopy | GERLLESHFMSPEKVQKELFQHWNIPFKQPSYPSVK<MYNQN<LALTQKLWMEE*FKRK-GLLGKKLA*K |
Parental | GIDYDFPSLILQKTEGVSKTNRQTSTKGQVLRKKKKKVLGTPNVPEKTVDSQGPTPVCTPTFLERRKSEV |
GIDY.FPSLILQK.EG.SK.N.Q.STKGQVL..KKKKVLGTP..PEKTVD..GPTPVCT.TFL.R.KSEV | |
Retrocopy | GIDYYFPSLILQKMEGISKMNHQMSTKGQVLH-KKKKVLGTPDTPEKTVDT*GPTPVCTSTFLKR*KSEV |
Parental | AELNDDDKDNEIVFKEPISCVKEEIQETQTPTHSRKKRRRKSNQ |
AE.NDDD..NEIVFK.PI.CVKE.IQETQTPTHS..KR.RK.NQ | |
Retrocopy | AEMNDDDENNEIVFKQPICCVKE*IQETQTPTHS-QKR*RKTNQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 9 .41 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 6 .35 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .24 RPM |
SRP007412_heart | 0 .00 RPM | 7 .36 RPM |
SRP007412_kidney | 0 .00 RPM | 9 .74 RPM |
SRP007412_liver | 0 .00 RPM | 3 .21 RPM |
SRP007412_testis | 0 .26 RPM | 10 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019387 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000002227 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000013386 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000005017 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000008535 | 3 retrocopies | |
Homo sapiens | ENSG00000155438 | 5 retrocopies | |
Gorilla gorilla | ENSGGOG00000023498 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000030731 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000015787 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000006481 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000020928 | 11 retrocopies | |
Monodelphis domestica | ENSMODG00000000152 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000001163 | 4 retrocopies | |
Pongo abelii | ENSPPYG00000025875 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012419 | 5 retrocopies | |
Pteropus vampyrus | ENSPVAG00000016707 | 1 retrocopy | |
Sorex araneus | ENSSARG00000006252 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001123 | 4 retrocopies | |
Vicugna pacos | ENSVPAG00000005847 | 2 retrocopies |