RetrogeneDB ID: retro_mmur_1021

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_164170:7..681(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SLC25A6
• Ensembl ID: ENSMICG00000006136
• Aliases: None
• Description: solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 [Source:HGNC Symbol;Acc:10992]

Sequence

>retro_mmur_1021
GTGCAACATGCCAGCACGCAGGTCACGGCCGACAAGCGGTACACGGGCATCGTGGCCTGCCTTGTGCGCATCCCCAAGGA
GCAGGGCGTGCTGTCCTTCCCGAGGGGCAGCCTGGCCCACGTCACCTGCTAGTTCCCCACGCAAGCCCTCAACTTGGCCT
TCAAGGTTGTGTACAAGCAGATCTGCCTGGGGTGCATGGACGAGCACGCGCAGTTCTGGAGGTATTTTGCCGGCAACCTG
GCCTGCGGAGGGGCCGCCGGGGCCACCTCCCTCTGCGTCATGTACCCGCTGGATTTCGCAGAGACCTGCTTGGCCACAGA
CATGGAAAAATCAGGCATTGAGAGGGAGTTCAAGGGCTGGGGGGCGGTCTGGTGACGATCACCAAGTCCCACGGGGTCCC
GGGCCTGGATCAGGGGCTTCAGCATCTTGGTTCAGGGCTTCATCGTCTGCAGGGCGGCCCACTTTGGCACGTACAGTACG
GCTAAAGGCACGCTCTGCGACCCCGAGAACACGCACATCGTGGTGAGCTGGACGGTCGCCAGACCTCATGGCGGTGGCCG
GCGTGGTCTCCTACCCCTTCAACGCCGTGCGGCTGTGGATGGTGATGTGTCTGGGCGCAAAGGAGCTGACATCAGGTACC
GGGTACCCTGCACGGTTGGAGGAAGATCTTCAGA

Alignment

ORF - retro_mmur_1021 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.4 %
• Parental protein coverage: 86.59 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  VQHASKQIAADKQYKGIVDCIVRIPKEQGMLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDKHT
          VQHAS.Q..ADK.Y.GIV.C.VRIPKEQG.LSF.RG.LA.V...FPTQALN.AFK..YKQI.LG..D.H.
Retrocopy VQHASTQVTADKRYTGIVACLVRIPKEQGVLSFPRGSLAHVTC*FPTQALNLAFKVVYKQICLGCMDEHA

Parental  QFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKSGTEREFKG-LGDCLVKITKSDGIRGLYQG
          QFWRYFAGNLA.GGAAGATSLC..YPLDFA.T.LA.D..KSG.EREFKG.LG..LV.ITKS.G..GL.QG
Retrocopy QFWRYFAGNLACGGAAGATSLCVMYPLDFAETCLATDMEKSGIEREFKG<LGGGLVTITKSHGVPGLDQG

Parental  -FNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNTHIVVSWMIA-QT-VTAVAGVVSYPFDTVRRRMMM-QS
          .F...VQG.I..RAA.FG.Y.TAKG.L.DP.NTHIVVSW..A.QT...AVAGVVSYPF..VR..M.M..S
Retrocopy >FSILVQGFIVCRAAHFGTYSTAKGTLCDPENTHIVVSWTVA<QT<LMAVAGVVSYPFNAVRLWMVM<VS

Parental  GRKGADIMYK-GTVDCWRKIFR
          GRKGADI.Y..GT...WRKIFR
Retrocopy GRKGADIRYR<GTLHGWRKIFR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1021 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1021 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000005609	1 retrocopy	retro_amel_255,
Homo sapiens	ENSG00000169100	5 retrocopies	retro_hsap_1207, retro_hsap_150, retro_hsap_2460, retro_hsap_4147, retro_hsap_4207,
Gorilla gorilla	ENSGGOG00000023004	2 retrocopies	retro_ggor_239, retro_ggor_2785,
Loxodonta africana	ENSLAFG00000001584	1 retrocopy	retro_lafr_713,
Microcebus murinus	ENSMICG00000002757	3 retrocopies	retro_mmur_322, retro_mmur_411, retro_mmur_974,
Microcebus murinus	ENSMICG00000006136	2 retrocopies	retro_mmur_1021 , retro_mmur_922,
Microcebus murinus	ENSMICG00000010865	1 retrocopy	retro_mmur_1356,
Macaca mulatta	ENSMMUG00000006899	1 retrocopy	retro_mmul_1182,
Nomascus leucogenys	ENSNLEG00000000389	1 retrocopy	retro_nleu_895,
Otolemur garnettii	ENSOGAG00000000963	2 retrocopies	retro_ogar_2492, retro_ogar_2499,