RetrogeneDB ID: retro_mmur_922

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_13172:10192..10854(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000005875
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: SLC25A6
• Ensembl ID: ENSMICG00000006136
• Aliases: None
• Description: solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 6 [Source:HGNC Symbol;Acc:10992]

Sequence

>retro_mmur_922
CGCTACTTCTCACGCCCTCAACTCTCAACTCGCCTTTAAGGATAAGTACAAGCAGATCTTCCTAGGGGGCGTGGACGAGC
GCACGCAGTTCTGGAGGTATTCTGCGGGCAACCTGGCCCCCGGAGGGGCTGCCGGGGCCACCTCCCTCTGCGTCGTGTAC
CTGCTGGATTTCGCCAGGACGCGCTCGGCTGCCGACGTGGGGAAGGGGAAGTCGGGCTCAGAGCAGGAGTTCAAGGGCCT
GGGAGACCGTCTGGTGAAGATCACCACGTCCGACGGCATCCGGGGCCTGTATCAGGGCTCCAGCCTCTCGGTGCAGGGCA
TCCTCGTCTACCGCTCGGCCTACTTCGGGGTATACGACGGCTGAAGGCATGCTCCCTGACCCCAAGACACGCACATCGTG
GTGAGCTGGATGATGGCCCAGACCGCGACAGCCGTGGCCGGAGTGGTCTCCTGCCCCTTCGACACGGTGCGGCGGCGGAT
GATGATGCAGTCCGGGCGCAAAGGAGCTGACGTCATGGACAAGGGGACCATGGACTGTTGGAGGAAGATCTTCAGAGATG
GGGGCGGCAAAGCTTTCTTCAAGGGTGCCTGGTCCACCGTCCTCAGAGGCATGGGGGGACGCCTTCGCGCTGGTCCTGTA
CGATGAGCTGAAGAAAGTCATC

Alignment

ORF - retro_mmur_922 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.82 %
• Parental protein coverage: 83.91 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  RYFPTQALN-FAFKDKYKQIFLGGVDKHTQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADV--G
          RYF....L...AFKDKYKQIFLGGVD..TQFWRY.AGNLA.GGAAGATSLC.VY.LDFARTR.AADV..G
Retrocopy RYFSRPQLS>LAFKDKYKQIFLGGVDERTQFWRYSAGNLAPGGAAGATSLCVVYLLDFARTRSAADVGKG

Parental  KSGTEREFKGLGDCLVKITKSDGIRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNTHIVVSWMI
          KSG.E.EFKGLGD.LVKIT.SDGIRGLYQG...SVQGI..YR.AYFGVYD......P.P..THIVVSWM.
Retrocopy KSGSEQEFKGLGDRLVKITTSDGIRGLYQGSSLSVQGILVYRSAYFGVYDG*R-HAP*PQDTHIVVSWMM

Parental  AQTVTAVAGVVSYPFDTVRRRMMMQSGRKGADIMYKGTVDCWRKIFRDEGGKAFFKGAWSNVLRGMGG-A
          AQT.TAVAGVVS.PFDTVRRRMMMQSGRKGAD.M.KGT.DCWRKIFRD.GGKAFFKGAWS.VLRGMGG.A
Retrocopy AQTATAVAGVVSCPFDTVRRRMMMQSGRKGADVMDKGTMDCWRKIFRDGGGKAFFKGAWSTVLRGMGG>A

Parental  FVLVLYDELKKVI
          F.LVLYDELKKVI
Retrocopy FALVLYDELKKVI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_922 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_922 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 19 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000005609	1 retrocopy	retro_amel_255,
Homo sapiens	ENSG00000169100	5 retrocopies	retro_hsap_1207, retro_hsap_150, retro_hsap_2460, retro_hsap_4147, retro_hsap_4207,
Gorilla gorilla	ENSGGOG00000023004	2 retrocopies	retro_ggor_239, retro_ggor_2785,
Loxodonta africana	ENSLAFG00000001584	1 retrocopy	retro_lafr_713,
Microcebus murinus	ENSMICG00000002757	3 retrocopies	retro_mmur_322, retro_mmur_411, retro_mmur_974,
Microcebus murinus	ENSMICG00000006136	2 retrocopies	retro_mmur_1021, retro_mmur_922 ,
Microcebus murinus	ENSMICG00000010865	1 retrocopy	retro_mmur_1356,
Macaca mulatta	ENSMMUG00000006899	1 retrocopy	retro_mmul_1182,
Nomascus leucogenys	ENSNLEG00000000389	1 retrocopy	retro_nleu_895,
Otolemur garnettii	ENSOGAG00000000963	2 retrocopies	retro_ogar_2492, retro_ogar_2499,