RetrogeneDB ID: retro_mmur_1025

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_16508:10895..11663(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GEMIN8
• Ensembl ID: ENSMICG00000015984
• Aliases: None
• Description: gem (nuclear organelle) associated protein 8 [Source:HGNC Symbol;Acc:26044]

Sequence

>retro_mmur_1025
ACAGCTCACGAGCTTCGGTGCTCATTCGTATTTTACTAGTCCGAGATGGCCGCGAGGGCGTCAGCCTCGAACGCGGCTGA
GTGTTGGTATTCTCACCCGGTGTATGCAAGATACTGGCAACATTATCATAAAGCAATGGCTTGGTTGCAGAGCCACCAGA
ATGCCTACTGGAAGGCTGTGGGGTCCTGTTTCAATTTTCCGTGGTACCTCTCTCCTGCAGTGCTTCCCCAAAGCTCTTAC
GATGACCAGCCTGGATATCCTCAGTCCTTCTATGACCTCCACGCGGCCTGGCAGGACTCCCTCTACGATTCTTCACATCT
CAGAAGGTCTGGGCAGCATGCACACGACAGCGGTGGGATCCAGGCATCCCCCAGGGACGACCGGTCTGTGTCTGAAGCGA
TGGAGGTAGAAACCGAGTCAGAGGAGGAGGTAGAATGCGACCTGAGCAATATGGAAATCACCGAGGAGCTCCGCCAGTAC
TTTGCGGAGACCGAGAGGCACAGAGAAGAGCGACGGCGGCAGCAGCAGCTGGACGCGGAGCGCCTGGACGACTACGTGCA
CGCCGACCACGACCTGTGGTACAACGCCCGCAGGTCCGCCCAGCTCCCGAACGAGAGGCCGGGCGAGCGGCGCCGGGCCG
AGATGGAGCGGCTGTACGGGGACAGCGCCGCCAAGATCCAGGCCATGGAGGCTGCCGTGCAGCTGAGCTTTGACAAGCAC
TGCGACAGAAAGCAGCCCAAGTACTGGCCCGTCATCCCCCTGAAGTTC

Alignment

ORF - retro_mmur_1025 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.05 %
• Parental protein coverage: 75.96 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TPRECQCPFGLLQSEMAAKESTSKATECWYSHPVYARYWQHYYQAMAWMRCHQNAYRKAMESYFSVSWYL
          T..E..C.F....SEMAA..S.S.A.ECWYSHPVYARYWQHY..AMAW...HQNAY.KA..S.F...WYL
Retrocopy TAHELRCSFVFY*SEMAARASASNAAECWYSHPVYARYWQHYHKAMAWLQSHQNAYWKAVGSCFNFPWYL

Parental  PPAVLPQSSYSNEAGYPQTFCDHHMAWQDSHSSSSRFGRSGQQPQNSSRIQPSSREDQASSEDEETETES
          .PAVLPQSSY....GYPQ.F.D.H.AWQDS...SS...RSGQ....S..IQ.S.R.D...SE..E.ETES
Retrocopy SPAVLPQSSYDDQPGYPQSFYDLHAAWQDSLYDSSHLRRSGQHAHDSGGIQASPRDDRSVSEAMEVETES

Parental  DGEVECDLSNMEITEELRQYFAETERHREERRRQQQLDAERLGDYVNADHDLYCNTRRSVEPPTERPGER
          ..EVECDLSNMEITEELRQYFAETERHREERRRQQQLDAERL.DYV.ADHDL..N.RRS...P.ERPGER
Retrocopy EEEVECDLSNMEITEELRQYFAETERHREERRRQQQLDAERLDDYVHADHDLWYNARRSAQLPNERPGER

Parental  RQAEMKRLYGDSAAKIQAMEAAVQLSFDKHCDRKQPKYWPVIPLKF
          R.AEM.RLYGDSAAKIQAMEAAVQLSFDKHCDRKQPKYWPVIPLKF
Retrocopy RRAEMERLYGDSAAKIQAMEAAVQLSFDKHCDRKQPKYWPVIPLKF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1025 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1025 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000015984	1 retrocopy	retro_mmur_1025 ,
Tarsius syrichta	ENSTSYG00000009934	1 retrocopy	retro_tsyr_1309,