RetrogeneDB ID: retro_tsyr_1309

Retrocopy location

• Organism: Tarsier (Tarsius syrichta)
• Coordinates: scaffold_38917:14620..15205(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GEMIN8
• Ensembl ID: ENSTSYG00000009934
• Aliases: None
• Description: gem (nuclear organelle) associated protein 8 [Source:HGNC Symbol;Acc:26044]

Sequence

>retro_tsyr_1309
AAGCTTCAGCACCCACTTGGACTTTTACGATCAGAGATGGCCGCAAAGGCATCAACATCCAAAGCTGCTGAGTCTTGGTA
TTCTCATCCAGTGTATGCGAGATACTGGCAACATTATCATCAAGCAATGTCTTGGATGAGAAGCCACCAGAATGCCTACA
GGAAGGCCATGGAATTCTATTTCAGTTTTTCATGTTACTTCCCTCCTGAGTTTCTTCCCCAAAGCTCGTATGATAACGAG
GCTGGGTATCCTCAGTCCTTCTGTGACCAAATGGCCTGGGAAGACTCGCACTGCAGTTCTTCACATTTCAAAATGTCTGG
GCAGTATCCATGTGACAACAGTAGGATCCAGGCATCCGAAAGAGAAGACCAAGCTCTGTCTGAAGAGGAAGAGATGGAGA
CAGAGTCGGATGAGGAAATAGAATGTGACCTGAGCAACATGGAAATCACCGAGGAACTCCGCCAGTACTTTGCACAGACC
GAGAGACACAGAGTAGAACGACGATGGCAGCAGCAGCTGGATGCAAAGCGCCTGAGGGACTATGTGAATGCTGACCACGA
CCTGCATCCCACCCGCCGGTCAGTG

Alignment

ORF - retro_tsyr_1309 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.1 %
• Parental protein coverage: 69.18 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ELQHPLGLSRSEMAAKASTSKAAESWYSHPVYARYWQHYHQAMS-MRSHQNAYRKAMEFYFSLQ-YFPXX
          .LQHPLGL.RSEMAAKASTSKAAESWYSHPVYARYWQHYHQAMS.MRSHQNAYRKAMEFYFS...YFP..
Retrocopy KLQHPLGLLRSEMAAKASTSKAAESWYSHPVYARYWQHYHQAMSWMRSHQNAYRKAMEFYFSFSCYFPPE

Parental  XXXXXXXXXXXXXXXSFCDQMAWEDSHCSSSHFRMSGQYPCDNSRIQASKREDQALSEEEEMETESDEEI
          ...............SFCDQMAWEDSHCSSSHF.MSGQYPCDNSRIQAS.REDQALSEEEEMETESDEEI
Retrocopy FLPQSSYDNEAGYPQSFCDQMAWEDSHCSSSHFKMSGQYPCDNSRIQASEREDQALSEEEEMETESDEEI

Parental  ECDLSNMEITEELRQYFAQTEKHREERRRQQQLDAKRLSDYVNADHDLYHTRRSV
          ECDLSNMEITEELRQYFAQTE.HR.ERR.QQQLDAKRL.DYVNADHDL..TRRSV
Retrocopy ECDLSNMEITEELRQYFAQTERHRVERRWQQQLDAKRLRDYVNADHDLHPTRRSV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tarsius syrichta was not studied using RNA-Seq expression data.

ChIP-Seq

Tarsius syrichta was not studied using ChIP-Seq data.

EST

Tarsius syrichta was not studied using EST data.

TSS

Tarsius syrichta was not studied using FANTOM5 data.

Lab

retro_tsyr_1309 was not experimentally validated.

Homology

Retrocopy orthology:

Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000015984	1 retrocopy	retro_mmur_1025,
Tarsius syrichta	ENSTSYG00000009934	1 retrocopy	retro_tsyr_1309 ,