RetrogeneDB ID: retro_mmur_1124

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_23913:6248..7649(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: NOP56
• Ensembl ID: ENSMICG00000016553
• Aliases: None
• Description: NOP56 ribonucleoprotein [Source:HGNC Symbol;Acc:15911]

Sequence

>retro_mmur_1124
GTGGAGGAGAACGTGCTCAACCTGGGCAGATTCCACAGCCACGTTCGCCTAGTGGCCATCTGTCCCTCTGCCTCATCCCA
GGTTGCCTTGGAAGATGCCAGTGTGGAGTCTGAAGGTGTTGCTCATGAGCACCTCCATCGGCTTTTGGAGATCCACTTGC
CCTCCAGAAAGAAGAAAGTACTCCTGGGGGTAGGGCATTCCAAAGTTGGTGCTGTGGTACAAGAGGCGTTAGGGTGTAGA
TCGGAGGCGTGATGGCCGAGGTCCTGCGAGGAGTTCATCTGCACTTCCATAACGTGGTGAAGAGTCTGACCGACCTGTCA
GCTTGTAAAGTCCAACTGGCACTGGGGCACAGCTATTCTTGTGCCAAAGTTAAATGTAATGTGAACCAAGTGGGAGTGTG
ATCATCCAGTCCATTAGTCTCCTGGATCAACTGGATAAAGACATCAATACCTGCTCTGTGGGTGACAGAAAGTGGTATGG
GTGTCACTTTCTGGAGCTGGTGAAGATCAACAGCAATGCCACATACTGCCTCCTCATCCAGTTCATTGCGAAGGGAAGGG
AGCTGAATGAGGAAAAGCTGGAGAAGCTGGAGGAGCTAACAGTGGTTGGGGCCAAGACGAAGGCTATTCTGGATGCCTCA
TGGTCCTCCATGGGCACGGATATGTCTGCCATTGGCTTGACGAACATTGAGAGCTTCTCCCATCGTGTTGTCTTTGTCAG
AGCACTGCCAAGCCTACACACTTGCCTGCACTCCAAGACGAGCCAAGTAGCCTCCAGCCTGTCAGCCCTAACCAGGGAAG
TGGCAGGTGCATGTCCCATCCCTCAGGCTGGCTGCCTCCCCCGCCTAGCCAGGTACCTAGCATCCACAGAACAGATCCTT
GGGACCGAAAAGGCCCTGTTCAGAGCCCTAAAGACAAGGGTAACTCACCAAAATCTGGACTCATTTTCCACCCCACCTTC
ACTGGCCGAACAGCTGCTGAGAAGAAAGGCCGTATCTCCCGAAACCTGGCAAACAAATGCAGTATTGCCCCATGAATGAC
TGCTTCTCTGAGGTGCCTGTGAGTGTATCTGGGGAGAAGCTTTGAGAACAAGTGGAGGAATGGCTGTCCTTCTATGGGAC
TGGAGAGATTCATGACAGAATCTGGATGGTGGTGGCAGGAAGGAAGTAATGGTTCAGCCAGAGGAAGCAGTGGCTGAGAT
CACCAGGAAACTAAGAAACAGGAGAAGAAACCCTTGAAGAAGGGAGAGAAAACAACCGCTGCGCTTGCCCTTGTGTCTTC
AGAAAACAGCAGCTGTGCTCTGGAGAAGTGTGAGGAGACAGCTGAAAAATCCAAAAAGAAGAAAAAGCAAAAGCTCCAGG
AGCTTCCTCGGGAGAATGGAGTGGAAGGCTGCCCATCTGTC

Alignment

ORF - retro_mmur_1124 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.09 %
• Parental protein coverage: 93.61 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 6

Retrocopy - Parental Gene Alignment:

Parental  VEECVLNLGKFHNIVRLVAFCPFASSQVALENANAVSEGVVHEDLRLFLETHLPSKKKKVLLGVGDPKIG
          VEE.VLNLG.FH..VRLVA.CP.ASSQVALE.A...SEGV.HE.L...LE.HLPS.KKKVLLGVG..K.G
Retrocopy VEENVLNLGRFHSHVRLVAICPSASSQVALEDASVESEGVAHEHLHRLLEIHLPSRKKKVLLGVGHSKVG

Parental  AAIQEELGYNCQT-GGVVAEVLRGVRLHFHNLVKGLTDLSACKAQLGLGHSYR-AKVKFNVNRV-DNMII
          A..QE.LG..C...GGV.AEVLRGV.LHFHN.VK.LTDLSACK.QL.LGHSY..AKVK.NVN.V....II
Retrocopy AVVQEALG--CRS<GGVMAEVLRGVHLHFHNVVKSLTDLSACKVQLALGHSYSCAKVKCNVNQV<GSVII

Parental  QSISLLDQLDKDINTFSMRVREWYGYHFPELVKIINDNATYCRLAQYIGNRRELNEEKLEKLEELTMDGA
          QSISLLDQLDKDINT.S...R.WYG.HF.ELVK.IN.NATYC.L.Q.I...RELN..........T..GA
Retrocopy QSISLLDQLDKDINTCSVGDRKWYGCHFLELVK-INSNATYCLLIQFIAKGRELNXXXXXXXXXXTVVGA

Parental  KAKAILDASRSSMGMDISAIDLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLI
          K.KAILDAS.SSMG.D.SAI.L.NIESFS.RVV.......SLHT.L.SK.SQVA.SLSAL..E..GA..I
Retrocopy KTKAILDASWSSMGTDMSAIGLTNIESFSHRVVFVRAL-PSLHTCLHSKTSQVASSLSALTREVAGACPI

Parental  AHAGSLTNLAKYPASTVQILGAEKALFRALKTR-GNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSI
          ..AG.L..LA.Y.AST.QILG.EKALFRALKTR.GN.PK.GLIFH.TF.GR.AA..KGRISR.LANKCSI
Retrocopy PQAGCLPRLARYLASTEQILGTEKALFRALKTR<GNSPKSGLIFHPTFTGRTAAEKKGRISRNLANKCSI

Parental  ASRI-DCFSXXXXXXXXXXLREQVEERLSFYETGEIPRK-NLD--VMKEAVVQAEEAAAEIARKL-EKQE
          A....DCFS..........L.EQVEE.LSFY.TGEI....NLD....KE..VQ.EEA.AEI.RKL..KQE
Retrocopy AP*M<DCFSEVPVSVSGEKL*EQVEEWLSFYGTGEIHDR<NLDGGGRKEVMVQPEEAVAEITRKL<KKQE

Parental  KKRLKKEKKRLAALAL-ASENSSSTQEECEETVEKPKKKKKQKPQEVPQENGMEDHPSI
          KK.LKK..K..AALAL..SENSS...E.CEET............QE.P.ENG.E..PS.
Retrocopy KKPLKKGEKTTAALALVSSENSSCALEKCEETXXXXXXXXXXXLQELPRENGVEGCPSV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1124 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1124 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000016553	2 retrocopies	retro_mmur_1124 , retro_mmur_926,