RetrogeneDB ID: | retro_mmur_926 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_13273:14368..15299(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NOP56 | ||
| Ensembl ID: | ENSMICG00000016553 | ||
| Aliases: | None | ||
| Description: | NOP56 ribonucleoprotein [Source:HGNC Symbol;Acc:15911] |
Retrocopy-Parental alignment summary:
>retro_mmur_926
CAGAAGTGGTATGGGTGTCACTTTCTGGAGCTGGTGAAGATCAACAGCAATGCCACATACTGCCTCCTCATCCAGTTCAT
TGCGAAGGGAAGGGAGCTGAATGAGGAAAAGCTGGAGAAGCTGGAGGAGCTAACAGTGGTTGGGGCCAAGACGAAGGCTA
TTCTGGATGCCTCATGGTCCTCCATGGGCACGGATATGTCTGCCATTGGCTTGACGAACATTGAGAGCTTCTCCCATCGT
GCTGTCTTTGTCAGAGCACCGCCAAGCCTACACACTTGCCTGCACTCCAAGACGAGCCAAGTAGCCTCCAGCCTGTCAGC
CCTAACCAGGGAAGTGGCAGGTGCTGTCATCCCTCAGGCTGGCTGCCTCCCCCGCCTGGCCAGGTACCTAGCATCCACAG
AACAGATCCTTGGGACCGAAAAGGCCCTGTTCAGAGCCCTAAAGACAAGGGTAACTCACCAAAATCTGGACTCATTTTCC
ACCCCACCTTCACTGGCCGAACACCTGCCGAGAAGAAAGGCCGTATCTCCCGAAACCTGGCAAACAAATGCAGTATTGCC
CCATGAATGACTGCTTCTCTGAGGTGCCTGTGAGTGTATCTGGGGAGAAGCTTTGAAAACAAGTGGAGGAATGGCTGTCC
TTCTATGGGACTGGAGAGATTCATGACAGAATCTGGATGGTGGTGGCAGGAAGGAAGTAATGGTTCAGCCAGAGGAAGCA
GTGGCTGAGATCACCAGGAAACTAAGAAACAGGAGAAGAAACCCTTGAAGAAGGGAGAGAAACAGCCGCTGCGCTTGCCC
TTGTGTCTTCAGAAAACAGCAGCTGTGCTCTGGAGGAGTGTGAGGAGACAGCTGAAAAATCCAAAAAGAAGAAAAAGCAA
AAGCTCCAGGAGCTTCCTCGGGAGAATGGAGTGGAAGGCTGCCCATCTGTC
ORF - retro_mmur_926 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 59.38 % |
| Parental protein coverage: | 62.28 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 5 |
Retrocopy - Parental Gene Alignment:
| Parental | REWYGYHFPELVKIINDNATYCRLAQYIGNRRELNEEKLEKLEELTMDGAKAKAILDASRSSMGMDISAI |
| ..WYG.HF.ELVKI.N.NATYC.L.Q.I...RELN..........T..GAK.KAILDAS.SSMG.D.SAI | |
| Retrocopy | QKWYGCHFLELVKI-NSNATYCLLIQFIAKGRELNXXXXXXXXXXTVVGAKTKAILDASWSSMGTDMSAI |
| Parental | DLINIESFSSRVVSLSEYRQSLHTYLRSKMSQVAPSLSALIGEAVGARLIAHAGSLTNLAKYPASTVQIL |
| .L.NIESFS.R.V.......SLHT.L.SK.SQVA.SLSAL..E..GA..I..AG.L..LA.Y.AST.QIL | |
| Retrocopy | GLTNIESFSHRAVFV-RAPPSLHTCLHSKTSQVASSLSALTREVAGA-VIPQAGCLPRLARYLASTEQIL |
| Parental | GAEKALFRALKTR-GNTPKYGLIFHSTFIGRAAAKNKGRISRYLANKCSIASRI-DCFSXXXXXXXXXXL |
| G.EKALFRALKTR.GN.PK.GLIFH.TF.GR..A..KGRISR.LANKCSIA....DCFS..........L | |
| Retrocopy | GTEKALFRALKTR<GNSPKSGLIFHPTFTGRTPAEKKGRISRNLANKCSIAP*M<DCFSEVPVSVSGEKL |
| Parental | REQVEERLSFYETGEIPRK-NLD--VMKEAVVQAEEAAAEIARKL-EKQEKKRLKKEKKR-LAALAL-AS |
| ..QVEE.LSFY.TGEI....NLD....KE..VQ.EEA.AEI.RKL..KQEKK.LKK..K...AALAL..S | |
| Retrocopy | *KQVEEWLSFYGTGEIHDR<NLDGGGRKEVMVQPEEAVAEITRKL<KKQEKKPLKKGEKQ<AAALALVSS |
| Parental | ENSSSTQEECEETVEKPKKKKKQKPQEVPQENGMEDHPSI |
| ENSS...EECEET............QE.P.ENG.E..PS. | |
| Retrocopy | ENSSCALEECEETAXXXXXXXXXXXQELPRENGVEGCPSV |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_926 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_926 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000016553 | 2 retrocopies |
retro_mmur_1124, retro_mmur_926 ,
|