RetrogeneDB ID: retro_mmur_1137

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_24952:9360..9640(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000016318
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ATP5D
• Ensembl ID: ENSMICG00000014960
• Aliases: None
• Description: ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit [Source:HGNC Symbol;Acc:837]

Sequence

>retro_mmur_1137
CCCACTCTGCAGGTCCTGCGGCCCGGCTGGTGGTGGTGCACGCGGAGGATGGCGCCGCCTCCAAGGACTGCCTGAGCACC
GGCTGCGTCACCGTGAATGCCGACTCCTCGGTGCAGCTACTGGCGGAAGAGGCAGTGACGCTGGGCATGCTGGACCTGGG
GACAGCCAAGGCGAACTTGGAGAAGGTGCAGGTGGAGCTGTTGGGGGCAGGCGACGAGGCCCCGAGGGCGGAGATCCAGA
TCTGCAAGGGGGCCAACGCGGCCTGGTGAGGGCCCTGGAG

Alignment

ORF - retro_mmur_1137 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.08 %
• Parental protein coverage: 77.69 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PTLQVLRPG-MVVVHAEDGTTSKYFVSSGSVTVNADSSVQLLAEEAVTLDMLDLGAAKANLEKAQAELSG
          PTLQVLRPG..VVVHAEDG..SK...S.G.VTVNADSSVQLLAEEAVTL.MLDLG.AKANLEK.Q.EL.G
Retrocopy PTLQVLRPG<LVVVHAEDGAASKDCLSTGCVTVNADSSVQLLAEEAVTLGMLDLGTAKANLEKVQVELLG

Parental  AADEAARAEIQIRIEANEA-LVKALE
          A.DEA.RAEIQI...AN.A.LV.ALE
Retrocopy AGDEAPRAEIQICKGANAA<LVRALE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1137 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1137 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Anolis carolinensis	ENSACAG00000002168	1 retrocopy	retro_acar_96,
Microcebus murinus	ENSMICG00000014960	1 retrocopy	retro_mmur_1137 ,
Monodelphis domestica	ENSMODG00000005314	1 retrocopy	retro_mdom_1079,
Rattus norvegicus	ENSRNOG00000014625	1 retrocopy	retro_rnor_1978,