RetrogeneDB ID: retro_mmur_115

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_133:39943..40280(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000015265
• Aliases: None
• Description: None

Sequence

>retro_mmur_115
ATTGCCTTCAGTGGGGAAATTGAAGGCCTGGATGATACTTTTAAAAAGCTAGAGTTTCTGAGTATGGCTACCGTGGAACT
AAGTTCACTTGCCTGGCTTCCCAGCTTAAATAAACTTCAAAAATCAGGGCTTAGTGATAATATGATTTCTGGAGGCTTGG
AAGTCCTGGCAGAGAAATGTCCAAATCTTAGTTTCCTAAATCTGAGTGGAAACAAAATCAAAGATCTTAGTGCAGTAGAA
GCTATGCCAAATCTTAAAAATTTTAAAAGTCTTGCCTTGTTTAACTATGAGATCACAAACCTGGAAGATTTGTAGAGAAA
GTACTTTAGAACTGCTG

Alignment

ORF - retro_mmur_115 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 78.76 %
• Parental protein coverage: 50.22 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  LCVNGEIEGLNDTFKELEFLSMANVELSSLARLPSLNKLRKLELSDNIISGGLEVLAEKCPNLTYLNLSG
          ....GEIEGL.DTFK.LEFLSMA.VELSSLA.LPSLNKL.K..LSDN.ISGGLEVLAEKCPNL..LNLSG
Retrocopy IAFSGEIEGLDDTFKKLEFLSMATVELSSLAWLPSLNKLQKSGLSDNMISGGLEVLAEKCPNLSFLNLSG

Parental  NKIKDLSTVEALQNLKNLKSLDLFNCEITNLEDY-RESIFELL
          NKIKDLS.VEA..NLKN.KSL.LFN.EITNLED..RES..ELL
Retrocopy NKIKDLSAVEAMPNLKNFKSLALFNYEITNLEDL>RESTLELL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_115 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_115 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 18 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000009710	1 retrocopy	retro_cjac_2926,
Dipodomys ordii	ENSDORG00000011690	4 retrocopies	retro_dord_311, retro_dord_358, retro_dord_495, retro_dord_777,
Loxodonta africana	ENSLAFG00000026778	1 retrocopy	retro_lafr_580,
Microcebus murinus	ENSMICG00000015265	1 retrocopy	retro_mmur_115 ,
Monodelphis domestica	ENSMODG00000027412	2 retrocopies	retro_mdom_1802, retro_mdom_569,
Ochotona princeps	ENSOPRG00000010058	3 retrocopies	retro_opri_1223, retro_opri_52, retro_opri_774,
Ictidomys tridecemlineatus	ENSSTOG00000004170	5 retrocopies	retro_itri_1003, retro_itri_1031, retro_itri_1359, retro_itri_394, retro_itri_955,
Tupaia belangeri	ENSTBEG00000001989	1 retrocopy	retro_tbel_918,