RetrogeneDB ID: | retro_itri_955 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393349.1:838654..839098(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ANP32E | ||
Ensembl ID: | ENSSTOG00000004170 | ||
Aliases: | None | ||
Description: | acidic (leucine-rich) nuclear phosphoprotein 32 family, member E [Source:HGNC Symbol;Acc:16673] |
Percent Identity: | 68.67 % |
Parental protein coverage: | 61.41 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | EMKKRINMELRNRVSNQVTELVLDNCLCVNGEIEGLNDTFKELEF-LSMANVELSSLAQLPSLNKLRKLE |
E.....N.ELRNR.S..VTELVLDN.LCVNGE.E.LN.T..ELEF.L..AN..LSSLAQ.PSLNKL.KL. | |
Retrocopy | EQEEDMNRELRNRASEKVTELVLDNVLCVNGETEVLNATSEELEF<LNVANMKLSSLAQFPSLNKL*KLK |
Parental | LSDNIISGGLEVLAEK-CPNLTYLNLSGNKIKDLSTVEALQNLKNLKSLDLFNCEITNLEDYRESIFELL |
..DNI.S.GL..L.EK.CP..TYLNLSGNKIKDL.T.EAL.NL..LKSLDLFN.EI.NLEDY.ESI.ELL | |
Retrocopy | IYDNIVSSGLKILTEK>CPDFTYLNLSGNKIKDLTTLEALKNLNILKSLDLFN*EIRNLEDYEESICELL |
Parental | QQITYLDGFD |
.Q.T...GFD | |
Retrocopy | KQNT*FNGFD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009710 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000011690 | 4 retrocopies | |
Loxodonta africana | ENSLAFG00000026778 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000015265 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000027412 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000004170 | 5 retrocopies | |
Tupaia belangeri | ENSTBEG00000001989 | 1 retrocopy |