RetrogeneDB ID:

retro_mmur_1239

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_35254:8049..8404(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ARL8B
Ensembl ID:ENSMICG00000000244
Aliases:None
Description:ADP-ribosylation factor-like 8B [Source:HGNC Symbol;Acc:25564]


Retrocopy-Parental alignment summary:






>retro_mmur_1239
ATCTGGGACATAGGAGGACAACCCCGAGTTCGAAAGCATATGGAACAGTATTGCAGAGGAGTTAACATTATTGTTTACAT
GATAAATGCCGCGGATCGTAAAAAGATAGAAGCCTCCCGAAATGAGCTGCATAATCTTCTAGATAAACCACAGTTACAAG
GAATTCCAGTGCTAGTACTTGGAAACAAGAGAGATCTTCCTAATGCCTTGGATAAGAAACAGCTAATTGAAGAAATGAAA
CTGTCTGCTATTCAGGACAGAGAAATTTGCTGCTATTCAATTTCTTGCACAGAAAAGGATTAATATAGATAGTACACTTC
AGTGGCTTATTCAACATTCAAAATCTAGAAGAAGC

ORF - retro_mmur_1239 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.24 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNAL
IWDIGGQPR.R...E.YCRGVN.IVYMI.AADR.KIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNAL
RetrocopyIWDIGGQPRVRKHMEQYCRGVNIIVYMINAADRKKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNAL
ParentalDEKQLIEKMNLSAIQDREICCYSISCKEKD-NIDITLQWLIQHSKSRRS
D.KQLIE.M.LSAIQDREICCYSISC.EKD.NID.TLQWLIQHSKSRRS
RetrocopyDKKQLIEEMKLSAIQDREICCYSISCTEKD>NIDSTLQWLIQHSKSRRS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1239 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1239 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 13 parental genes, and 21 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000077572 retrocopies
Callithrix jacchus ENSCJAG000000158422 retrocopies
Homo sapiens ENSG000001341081 retrocopy
Gallus gallus ENSGALG000000083141 retrocopy
Gorilla gorilla ENSGGOG000000049521 retrocopy
Microcebus murinus ENSMICG00000000244 2 retrocopies
retro_mmur_1220, retro_mmur_1239 ,
Microcebus murinus ENSMICG000000020153 retrocopies
Microcebus murinus ENSMICG000000175451 retrocopy
Mustela putorius furoENSMPUG000000170352 retrocopies
Oryctolagus cuniculus ENSOCUG000000140902 retrocopies
Pongo abelii ENSPPYG000000136941 retrocopy
Tarsius syrichta ENSTSYG000000017241 retrocopy
Vicugna pacos ENSVPAG000000121142 retrocopies



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