RetrogeneDB ID: retro_mmur_1485

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_68064:4987..5521(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: UEVLD
• Ensembl ID: ENSMICG00000003117
• Aliases: None
• Description: UEV and lactate/malate dehyrogenase domains [Source:HGNC Symbol;Acc:30866]

Sequence

>retro_mmur_1485
ATGGAGTTCGACTGCGAGAGTCTGAGGCGGCTGCTTGGCAAGTACAAGTTCAGGGATCTAACTGTGGAAGAACTAAAGAA
TGTAAATGTATTTTTCCCACATTTTAGATATTCCATGGACACCTACGTTTTTAAAGATAGTTCCCAGAAAGACCTGCTGA
ATTTTACTGGCACTATTCCTGTGATGTATCAGGGTAATACATATAACTTACCAATTCGTTTCTGGATTTTGGATTCTCAC
CCTTTTGCTCCCCCCATTTGCTTCTTGAAGCCAACTGCAAATATGGGAATCTCAGTTGGAAAACATGTGGATGCTCAAGG
CAGAATATACTTGCCCTATCTCCAAAACTGGAGCCATCCTAAATCTGTCATTGTTGGATTAATTAAAGAAATGATTGCCA
AGTTTCAAGAGGAACTTCCTCTGTATTCTCTGTCATCATCTGATGAGGCACGGCAGGTAGACTTGCTAGCCTATATTGCA
AAAATCACTGAAGGTGTCTCAGACATAAATTCAAAGAGCTGGGCAAATCATGAA

Alignment

ORF - retro_mmur_1485 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.38 %
• Parental protein coverage: 53.96 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MEFDCESLRRLLGKYKFRDLTVEELKNVNVFFPHFRYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNTYNL
          MEFDCESLRRLLGKYKFRDLTVEELKNVNVFFPHFRYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNTYNL
Retrocopy MEFDCESLRRLLGKYKFRDLTVEELKNVNVFFPHFRYSMDTYVFKDSSQKDLLNFTGTIPVMYQGNTYNL

Parental  PIRFWILDSHPFAPPICFLKPTANMGISVGKHVDAQGRIYLPYLQNWSHPKSVIVGLIKE-IAKFQEELP
          PIRFWILDSHPFAPPICFLKPTANMGISVGKHVDAQGRIYLPYLQNWSHPKSVIVGLIKE.IAKFQEELP
Retrocopy PIRFWILDSHPFAPPICFLKPTANMGISVGKHVDAQGRIYLPYLQNWSHPKSVIVGLIKEMIAKFQEELP

Parental  LYSLSSSDEARQVDLLXXXXXXXXXVSDINSKSWANHE
          LYSLSSSDEARQVDLL.........VSDINSKSWANHE
Retrocopy LYSLSSSDEARQVDLLAYIAKITEGVSDINSKSWANHE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1485 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1485 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000003117	1 retrocopy	retro_mmur_1485 ,
Microcebus murinus	ENSMICG00000017183	2 retrocopies	retro_mmur_275, retro_mmur_300,
Mus musculus	ENSMUSG00000043262	1 retrocopy	retro_mmus_907,