RetrogeneDB ID: | retro_mmur_300 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_2299:10261..10971(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSMICG00000017183 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] |
Percent Identity: | 77.92 % |
Parental protein coverage: | 70.96 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MATLKEKLIAPVAEEEAAAPNNKITVGGVGQVGMACAISILGKSLADELALVDVLEDKLKGE-MMDLQHG |
MATLKEK.IAPV.EEE...P.NKITV.G.G.VGMACAISILGK.LADEL.LV.VLEDK.KG..MMDLQH. | |
Retrocopy | MATLKEKPIAPVGEEEVTVPDNKITVMGAGKVGMACAISILGKCLADELPLVGVLEDKRKGK<MMDLQHR |
Parental | SLFLQTSKIVADKDYSVTANSKIVVVTAGVRQQEG-ESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS |
SLFLQT.KIVADKDYSVT..SKIVVVT.G...QEG.ES.LN.VQRN.N.FKFIIPQI.KYS.DCIIIVVS | |
Retrocopy | SLFLQTPKIVADKDYSVTTSSKIVVVTVGNPKQEG>ESHLNVVQRNSNIFKFIIPQIIKYSSDCIIIVVS |
Parental | NPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVA |
NPVDILTYVTWKLSGL..H..IGSGCNLDSARF.YLMA.K.GI..SSCHGW.LGE.G.SSVA...GVN.A | |
Retrocopy | NPVDILTYVTWKLSGLSNHHAIGSGCNLDSARFCYLMAKKRGIPISSCHGWSLGEYGNSSVAM*NGVNMA |
Parental | GVSLQELNPEMGTDN-DSENWKEVHKMVVE |
.VSLQELNPEM..DN..SENWKEV.K.VVE | |
Retrocopy | YVSLQELNPEMKIDN<YSENWKEVDKTVVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016175 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000012195 | 9 retrocopies | |
Cavia porcellus | ENSCPOG00000007138 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013620 | 4 retrocopies | |
Felis catus | ENSFCAG00000012639 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015758 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000000972 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004825 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000003117 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017183 | 2 retrocopies |
retro_mmur_275, retro_mmur_300 ,
|
Myotis lucifugus | ENSMLUG00000012155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002679 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000017786 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030246 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000004763 | 9 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002462 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000013000 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000000576 | 1 retrocopy |