RetrogeneDB ID: retro_mmur_1510

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_72295:3893..4516(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: GMPR2
• Ensembl ID: ENSMICG00000001736
• Aliases: None
• Description: guanosine monophosphate reductase 2 [Source:HGNC Symbol;Acc:4377]

Sequence

>retro_mmur_1510
ATGCCTCATATCGACAACGATGTGAAAGATGTCCTGTTGGGGCCCAAACACAGCACCCTTAAGTCTCAAAGTGAGGTGGA
TCTCACAAGACCCTTTCCATTTCGGAACTCAAAGCAGATGTACACTGGGATCCCCATCACTGCCGCCAATATGGATAACG
TGGGCAAATTTGAGATGGCCAAGGTTCTCTGTAAGTTCTCCCTCTTCACTGCTGTCCATAAGCACTATAGCCTCGATCAA
TGGCAAGAGTTTGCTAGCCAGAATCCTGACTGTCTTGAGCATCTCGCTGCCGGCTCAGGCACTGGCTCTTCTGACTCTGA
ACAGCTGGAACAGATCCTGGAAGCAGATCCAGGTGAACTATATATGCCTGGATGTGGCAAATGGCTACTCTGAACACTTT
GTTGAATTTGTAAAGGATGTGTGGAAGCGCTTCCCTCAACACACCATCATGGCAGGGAATGTGGTAACAGGGAGAGACGG
TGGGAAGAGCTCATCCTCTCTGGGGCTGACATTATCAGGAGGAATTGGGCCAGGCTCTGTGTGTACCACTCGGAAGAAAA
CTGGAGTGGGGTATCCACGGCTCAGTGCAGTGATGGGGTGTGCTGATGCTGGCTCATGGCCTT

Alignment

ORF - retro_mmur_1510 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.16 %
• Parental protein coverage: 60.81 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MPHIDNDVKLDFKDVLLRPKRSTLKSRSEVDLTRSFSFRNSKQMYTGVPIIAANMDTVGTFEMAKVLCKF
          MPHIDNDV....KDVLL.PK.STLKS.SEVDLTR.F.FRNSKQMYTG.PI.AANMD.VG.FEMAKVLCKF
Retrocopy MPHIDNDV----KDVLLGPKHSTLKSQSEVDLTRPFPFRNSKQMYTGIPITAANMDNVGKFEMAKVLCKF

Parental  SLFTAVHKHYSLDQWQEFASQNPDCL-SILLPAQALALLTLNSWNRSWKLFPRNYICLDVANGYSEHFVE
          SLFTAVHKHYSLDQWQEFASQNPDCL.SI.LPAQALALLTLNSWNRSWK....NYICLDVANGYSEHFVE
Retrocopy SLFTAVHKHYSLDQWQEFASQNPDCL>SISLPAQALALLTLNSWNRSWKQIQVNYICLDVANGYSEHFVE

Parental  FVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPGSVCTTRKKTGVGYPQLSAVMECADA-A
          FVKDV.KRFPQHTIMAGNVVTG........S.......GIGPGSVCTTRKKTGVGYP.LSAVM.CADA.A
Retrocopy FVKDVWKRFPQHTIMAGNVVTGRDGGKSSSSLGLTLSGGIGPGSVCTTRKKTGVGYPRLSAVMGCADA>A

Parental  HGL
          HGL
Retrocopy HGL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1510 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1510 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000001231	1 retrocopy	retro_chof_1628,
Echinops telfairi	ENSETEG00000018395	1 retrocopy	retro_etel_373,
Microcebus murinus	ENSMICG00000001736	1 retrocopy	retro_mmur_1510 ,
Ictidomys tridecemlineatus	ENSSTOG00000002336	1 retrocopy	retro_itri_1331,