RetrogeneDB ID: | retro_mmur_1555 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_81822:292..856(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMICG00000014459 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | C15orf57 | ||
| Ensembl ID: | ENSMICG00000008817 | ||
| Aliases: | None | ||
| Description: | chromosome 15 open reading frame 57 [Source:HGNC Symbol;Acc:28295] |
Retrocopy-Parental alignment summary:
>retro_mmur_1555
CTCAGATTCCACATGAAAATGTTTGAAGGTGGTGACTCTACAGCCACAAGATCTAGCCGGGATCTCTGGGCTGAAATCAG
TTCCTGTTTGCCAAATCCTGACCAAGAAGATGATGCCAGCAATGCCTTCTCAGACTCCTTGTGGATTCTTACCCTGAAAG
TGAAGGCCACAGAGGGGCCGCGGCCTTTGCTGTTGAGCTGCCTATAAAGCCTTGGGCTCCCTTGCAGGATTCAGAAATGT
ATTTAGCATCTCTAGAGAGGAAACGGAGAAGAATCAAAGGTTTAAATCAGGAAGTCACTCCAAGGACATGCTTCAAACCC
TGGCCCGTGCCAAGAAGGAACACTGGGATGGGTTCCTCCAGGAGAAGTTAGCATCAGAGTTCTTCGTGGATGGACTTGAT
TCCGGTGAGAGCACCTTGGAACATTTCAAGAGGTGGCTGCAGCCAGATAAAGTAGCCATCAGCTCAGAGGAGGTCCAGTG
TCTGATTCCTCCGGAGTCACAGGTAGGGAAGCCAGCGCTGGGGAAGAGCCAGCAGCCAGCGAGGAGCCACGGCGGCGGCA
GCAG
ORF - retro_mmur_1555 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 86.46 % |
| Parental protein coverage: | 97.42 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | LRFQMKMFEGVDCTSTRSSRDLWAEICSCLPNPDQEDGASNAFSDSF-VDSYPESEGQRGAAAFAVELPI |
| LRF.MKMFEG.D.T.TRSSRDLWAEI.SCLPNPDQED.ASNAFSDS..VDSYPESEG.RGAAAFAVELPI | |
| Retrocopy | LRFHMKMFEGGDSTATRSSRDLWAEISSCLPNPDQEDDASNAFSDSL<VDSYPESEGHRGAAAFAVELPI |
| Parental | KPWAPLQDSEMYLASLERKLKRIKGLNQEVT-SKDMLRTLAQAKKECWDRFLQEKLASEFFVDGLDSDES |
| KPWAPLQDSEMYLASLERK..RIKGLNQEVT.SKDML.TLA.AKKE.WD.FLQEKLASEFFVDGLDS.ES | |
| Retrocopy | KPWAPLQDSEMYLASLERKRRRIKGLNQEVT<SKDMLQTLARAKKEHWDGFLQEKLASEFFVDGLDSGES |
| Parental | TLEHFKRWLQPDKVAISTEEVQYLIPPESQVEKPA-AGEEPAAREEPPAAEQ |
| TLEHFKRWLQPDKVAIS.EEVQ.LIPPESQV.KPA.AGEEPAA.EEP....Q | |
| Retrocopy | TLEHFKRWLQPDKVAISSEEVQCLIPPESQVGKPA<AGEEPAASEEPRRRQQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1555 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1555 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000008817 | 1 retrocopy |
retro_mmur_1555 ,
|
| Otolemur garnettii | ENSOGAG00000009925 | 1 retrocopy |