RetrogeneDB ID: retro_ogar_2486

Retrocopy location

• Organism: Bushbaby (Otolemur garnettii)
• Coordinates: GL873628.1:876393..876882(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C15orf57
• Ensembl ID: ENSOGAG00000009925
• Aliases: None
• Description: chromosome 15 open reading frame 57 [Source:HGNC Symbol;Acc:28295]

Sequence

>retro_ogar_2486
ATCTGTTCCTGTCTGCCAAATCCTGACCAGGAAAACGGTGCCAACAAGGCCTTCTCAGACTCCTTTGTGGATTCTTACCC
TGATGAAGGCCAGAGGAAATCAACAGACATTGCTGTCCAGCAAGCTGTAAAGCCTTGGGCTCCCTTGCAGGATTCAGAAA
TGTATTTAGCATCCCTAGAGAAGAAACTGAGAAGAATCAAAGGTTTAAATCAGGAAGTGACTTTTAAGGACACGCTTCGA
ACCCTGGCCCAAGCCAAGAAGGAATGAGGAGATCAGTTCCTTCAGGAAAAGTTACCCTCAGAGTTCTTTGTGGATGGACT
TGATTCTGATGAGAGCATCTTAGAACATTTCAAGAGGTGTCTCCAACCAGACAAAGTAGCCATCAGCACAGAGGAGGTTC
AGTATCTGATTCCTTCAAAGTTACAGGTTGAGAAGCTAGATGCCGGGGACGAGCCAGTGGCTGGGGATGCACCAGCAGCA
GGAGAACAA

Alignment

ORF - retro_ogar_2486 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 79.88 %
• Parental protein coverage: 88.65 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  ICSCLPNPDQEDAASNAFSDSFVDSYPGGEGQREAADFAVQPAIKPWAPLQDSEVYLASLEKKLRRIRGL
          ICSCLPNPDQE..A..AFSDSFVDSYP..EGQR...D.AVQ.A.KPWAPLQDSE.YLASLEKKLRRI.GL
Retrocopy ICSCLPNPDQENGANKAFSDSFVDSYPD-EGQRKSTDIAVQQAVKPWAPLQDSEMYLASLEKKLRRIKGL

Parental  NQEVTSKDMLRTLAQAKKECWDRFLQEKLASEFFVDGLDSDESTLEHFKRWLQPDKVAISTEEVQYLIPP
          NQEVT.KD.LRTLAQAKKE..D.FLQEKL.SEFFVDGLDSDES.LEHFKR.LQPDKVAISTEEVQYLIP.
Retrocopy NQEVTFKDTLRTLAQAKKE*GDQFLQEKLPSEFFVDGLDSDESILEHFKRCLQPDKVAISTEEVQYLIPS

Parental  ESQVEKQDTRNKPGAGDEPAAAEQ
          ..QVEK.D....P.AGD.PAA.EQ
Retrocopy KLQVEKLDAGDEPVAGDAPAAGEQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Otolemur garnettii was not studied using RNA-Seq expression data.

ChIP-Seq

Otolemur garnettii was not studied using ChIP-Seq data.

EST

Otolemur garnettii was not studied using EST data.

TSS

Otolemur garnettii was not studied using FANTOM5 data.

Lab

retro_ogar_2486 was not experimentally validated.

Homology

Retrocopy orthology:

Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000008817	1 retrocopy	retro_mmur_1555,
Otolemur garnettii	ENSOGAG00000009925	1 retrocopy	retro_ogar_2486 ,