RetrogeneDB ID: retro_mmur_1591

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_8844:56916..57846(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ATIC
• Ensembl ID: ENSMICG00000014573
• Aliases: None
• Description: 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase [Source:HGNC Symbol;Acc:794]

Sequence

>retro_mmur_1591
CTTAGCGAAGATGAGGTCAAGGTCTGCACGGTCTCTGATCTCTATAAAACCCTTACTCCCATATCAACTGCATATGCAAG
AGCAAGAGGGGCTGATAAGATGTCTTCGTTTGGTGATTTTGTTGCATTTTCTGATGTTTGTGATGTGCCAACTCTGAAAA
TTATATCCAGAGAAGTATCTGATGGTATTATTGCCCCAGGATATGAAGAAGCCTTGAAAATACGTTCTAGAAAGAAAAAT
GGAAACTACTGTGTTCTGCAGTTTTATAAACCAGATAAAAATAAAATTCAAACTCTCTTTGGTCTTTGTTTAAGCCAGAA
GAGATATACTTGTGTCGTTAACAGGTCATTATTTAGCAACGACGTCATTACCAAGAATAAATATTTTCTGTAGTCTGCTC
TCAGGGATCTCATCATGGCCACCATTGATGTCAGGTACACTCAGTCGAACTCCGAGTGCTACTCCAAGAAGGGGCAGGAT
ACTGGCATTGGAGCAGGACAACAGTCTTGGATACACTGCACACGCCTTGCAGGGGATAAGGCAAACTATGTGTGGCTCAG
ACACCATCCACAAGTGCTTTCAATGAAGTTTCAAACAGGAGTGAAGAGAGCAAAAATCTCCAATGCCATTGACCAATACA
TGACTGTGGCAATCAGCAAGTATGAAAATTTGATAACGTGGAAGGCAGTGTTTGGTGAAGTCCCTGAATTGTTAACTGAG
GCAGAGAAGAAGGAATGGGTTGGCAGACTAAGTGAAGTTTCTATCAGCTCTGATGGCTCTTTCCTTTCAGTGATAATGTG
GTAGAGCTGAAAGGAGTGGTATGCCGTACATTGCTGCTCGCTTCGGATCTGCTGCTGACAAAGGTGTGACTGAGGCTCCT
GATGAACTGGAAATAATCCTCACTCACACGAATCTTCACTCTTCCACCAC

Alignment

ORF - retro_mmur_1591 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.73 %
• Parental protein coverage: 53.04 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LSEDEAKVCMVYDLYKSLTPISTAYARARGADRMSSFGDFVALSDVCDVPTAKIISREVSDGIIAPGYEE
          LSEDE.KVC.V.DLYK.LTPISTAYARARGAD.MSSFGDFVA.SDVCDVPT.KIISREVSDGIIAPGYEE
Retrocopy LSEDEVKVCTVSDLYKTLTPISTAYARARGADKMSSFGDFVAFSDVCDVPTLKIISREVSDGIIAPGYEE

Parental  EALKILSKKKNGNYCVLQMDQSYKPDEDEVRTLFGLRLSQKRNNGVINKSLFSN-VVTKNKDLPESALRD
          .ALKI.S.KKNGNYCVLQ....YKPD.....TLFGL.LSQKR...V.N.SLFSN.V.TKNK....SALRD
Retrocopy -ALKIRSRKKNGNYCVLQF---YKPDKNKIQTLFGLCLSQKRYTCVVNRSLFSNDVITKNKYFL*SALRD

Parental  LIVATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLAGDKANYWWLRHHPQVLSMKFKTGVKRAEI
          LI.ATI.V.YTQSNS.CY.K.GQ..GIGAGQQS.IHCTRLAGDKANY.WLRHHPQVLSMKF.TGVKRA.I
Retrocopy LIMATIDVRYTQSNSECYSKKGQDTGIGAGQQSWIHCTRLAGDKANYVWLRHHPQVLSMKFQTGVKRAKI

Parental  SNAIDQYVTGTIGEDEDLIKWKALFEEVPELLTEAEKKEWVDKLSEVCISSDA-FFPFRDNV-DRAKRSG
          SNAIDQY.T..I...E.LI.WKA.F.EVPELLTEAEKKEWV..LSEV.ISSD...FPF.DNV..RA.RSG
Retrocopy SNAIDQYMTVAISKYENLITWKAVFGEVPELLTEAEKKEWVGRLSEVSISSDG<LFPFSDNV<GRAERSG

Parental  VAYIAAPSGSAADKVVIEACDELGIILAHTNLR-LFHH
          ..YIAA..GSAADK.V.EA.DEL.IIL.HTNL..LFHH
Retrocopy MPYIAARFGSAADKGVTEAPDELEIILTHTNLH<LFHH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1591 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1591 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 7 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000011695	4 retrocopies	retro_cjac_1538, retro_cjac_2185, retro_cjac_3116, retro_cjac_706,
Microcebus murinus	ENSMICG00000014573	1 retrocopy	retro_mmur_1591 ,
Myotis lucifugus	ENSMLUG00000001830	1 retrocopy	retro_mluc_1370,
Monodelphis domestica	ENSMODG00000015612	1 retrocopy	retro_mdom_1074,
Mustela putorius furo	ENSMPUG00000007676	1 retrocopy	retro_mputfur_1609,
Mus musculus	ENSMUSG00000026192	1 retrocopy	retro_mmus_2729,
Rattus norvegicus	ENSRNOG00000015511	1 retrocopy	retro_rnor_904,