RetrogeneDB ID: retro_mmur_1635

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_9975:28634..29223(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CBLL1
• Ensembl ID: ENSMICG00000012936
• Aliases: None
• Description: Cbl proto-oncogene-like 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:21225]

Sequence

>retro_mmur_1635
GGCGATCAAAATGGAGAAGAACGGTATGATGTCTGTGGAGGGGGTGAATCATTTAGAAATCAGCAAAGATCTACTGAAGA
ACTTTTTTGGGACTTTCAAGTAAACATCTTAGGTGAAAAGGATAATAGGTTAATCCATTTCTGTGACAAATGTGAATTAC
CCATTAAAATCTATGGGCGAATGATTCCGTGTAAACATGCATTTTGCTATACGTGTGCTGTTTTACGTGAAAGGGGAAGA
GATAAGACGTGTCCAGGCTGTAGTAATCCTGCATTGCGAATTGAGAAGCATACACAAGGTTCTCTCTTCATGTGTAGAAC
CATTCAAGGGTGCAAGAGAACGTATTTATCTCAAAGAAACTTAGAGGCACATATCAACCGCCGCCATGTGAGAGCTGAAA
ATCATGTTGCTTCTGCCTAACTTTAAGAAGTTCATCCTCTGTAATGCCCCACCACCAACTGAAATCCCTAAGCATTTTAT
AATGTGGCCAGACAAACATCATAAGAACCATATTACAAACCAGCATATGATGAGACCACTACTTCCTTTGGAACATGTGC
CACATGAACCTTATCATTAGCCATGTGAG

Alignment

ORF - retro_mmur_1635 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 64.65 %
• Parental protein coverage: 75.98 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GLYNEEERYDC--KGELF-NQRRFPGHLFWD-QINILGEKDDTPVHFCDKCGLPIKIYGRMIPCKHVFCY
          G..N.EERYD....GE.F.NQ.R....LFWD.Q.NILGEKD....HFCDKC.LPIKIYGRMIPCKH.FCY
Retrocopy GDQNGEERYDVCGGGESFRNQQRSTEELFWDFQVNILGEKDNRLIHFCDKCELPIKIYGRMIPCKHAFCY

Parental  DCAILHEKKGDKMCPGCSDPVQRIEQCTRGSLFMCSIVQGCKRTYLSQRDLQAHINHRHMRAEKPVTCAS
          .CA.L.E...DK.CPGCS.P..RIE..T.GSLFMC...QGCKRTYLSQR.L.AHIN.RH.RAE..V..A.
Retrocopy TCAVLRERGRDKTCPGCSNPALRIEKHTQGSLFMCRTIQGCKRTYLSQRNLEAHINRRHVRAENHVASA*

Parental  LENVHPPIAP-PPTEIPDRFIMPPDKHHMSHIPPKQHIMMPPPPLQHVPHEHYNQPHE
          L..VHP...P.PPTEIP..FIM.PDKHH..HI...QH.M.P..PL.HVPHE.Y..P.E
Retrocopy L*EVHPL*CP>PPTEIPKHFIMWPDKHHKNHI-TNQHMMRPLLPLEHVPHEPYH*PCE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1635 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1635 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000016379	1 retrocopy	retro_cjac_4046,
Homo sapiens	ENSG00000105879	1 retrocopy	retro_hsap_49,
Gorilla gorilla	ENSGGOG00000004921	1 retrocopy	retro_ggor_164,
Microcebus murinus	ENSMICG00000012936	1 retrocopy	retro_mmur_1635 ,
Nomascus leucogenys	ENSNLEG00000008660	1 retrocopy	retro_nleu_19,
Pongo abelii	ENSPPYG00000017904	1 retrocopy	retro_pabe_112,
Pan troglodytes	ENSPTRG00000019583	1 retrocopy	retro_ptro_67,
Rattus norvegicus	ENSRNOG00000007253	1 retrocopy	retro_rnor_1063,