RetrogeneDB ID: retro_mmur_18

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_23438:8508..9192(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000002221
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: SLC25A15
• Ensembl ID: ENSMICG00000007218
• Aliases: None
• Description: solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 [Source:HGNC Symbol;Acc:10985]

Sequence

>retro_mmur_18
GTGGCCGAGAACTCCGTCCTCTTTATGTGCTACGGCTTCTGCCAGCAGTTTGTGAGGAAAGTGGTCGGCTTGGACGAGCG
GGCAAAGCTGAGTGACCTGCAGACGGCGGTCTCTGGCTCCTTGGCCTCTGCGTTTGCTGCGCTGGCCCTCTGCCCCACTG
AGCTTGTGAAGTGCCGCCTACAGACCATGAAGGAAATGGAGATGTCGGGGAAGATAGCAAAAAGCTACGATACAATCTGG
TCTGTCGTCAAGAGTATCCTTAGAAAAGATGGCCCCTTAGGCTTCTACCGTGGACTCTCAGGTACTCTACTTCAGGAAAT
ACTAGGCTATTTCTTCTTCTTCGGTGGCTATGAACTGAGCCGATCATTTTTTGCGTCAGGGAAATCGAAAGATGAACTAG
GCCCTGTTCAGGTGATGTTAAGTGGTGGAGCCGCTGGAATGTGCCTCTGGCTTGTCGTGTTCCCAGTGGATTGCATTAAA
TCCAGAATTCAGGTTCTTTCCGTGCATGGTAAACAGGCAGGATTTATAGGAACCTTTTTAAATGTTGTGAGAAATGAAGG
AATACCAGCCTTATATTCCGGACTGAAAGCTCCTTTGATTCGAGCAATCCCTGCCAATGGGTCACTATTTTTGGTCTATG
AGTACAGCAGGAGGAAGATGATGAGCCAGTTGGAAGCATATTGA

Alignment

ORF - retro_mmur_18 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80.18 %
• Parental protein coverage: 75.42 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IAENSVLFMCYGFCQQVVRKVIGLDKQAKLSDLQNAAAGSFASAFAALVLCPTELVKCRLQTMFEMETSG
          .AENSVLFMCYGFCQQ.VRKV.GLD..AKLSDLQ.A..GS.ASAFAAL.LCPTELVKCRLQTM.EME.SG
Retrocopy VAENSVLFMCYGFCQQFVRKVVGLDERAKLSDLQTAVSGSLASAFAALALCPTELVKCRLQTMKEMEMSG

Parental  KITQSQNTVWSVVKSILRKDGPLGFYHGLSSTLLREVPGYFFFFGGYELSRSFFASGRSKDELGPVPLML
          KI..S..T.WSVVKSILRKDGPLGFY.GLS.TLL.E..GYFFFFGGYELSRSFFASG.SKDELGPV..ML
Retrocopy KIAKSYDTIWSVVKSILRKDGPLGFYRGLSGTLLQEILGYFFFFGGYELSRSFFASGKSKDELGPVQVML

Parental  SGGVGGICLWLAVYPVDCIKSRIQVLSMSGKQAGFIGTFISVVKNEGITALYSGLKPTMIRAFPANGALF
          SGG..G.CLWL.V.PVDCIKSRIQVLS..GKQAGFIGTF..VV.NEGI.ALYSGLK...IRA.PANG.LF
Retrocopy SGGAAGMCLWLVVFPVDCIKSRIQVLSVHGKQAGFIGTFLNVVRNEGIPALYSGLKAPLIRAIPANGSLF

Parental  LAYEYSRKLMMSQLEAH
          L.YEYSR..MMSQLEA.
Retrocopy LVYEYSRRKMMSQLEAY

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_18 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_18 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 14 parental genes, and 15 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000017797	1 retrocopy	retro_cjac_1776,
Cavia porcellus	ENSCPOG00000005570	2 retrocopies	retro_cpor_105, retro_cpor_107,
Equus caballus	ENSECAG00000007666	1 retrocopy	retro_ecab_72,
Homo sapiens	ENSG00000102743	1 retrocopy	retro_hsap_44,
Gorilla gorilla	ENSGGOG00000025261	1 retrocopy	retro_ggor_2294,
Microcebus murinus	ENSMICG00000007218	1 retrocopy	retro_mmur_18 ,
Macaca mulatta	ENSMMUG00000022585	1 retrocopy	retro_mmul_199,
Nomascus leucogenys	ENSNLEG00000001185	1 retrocopy	retro_nleu_1704,
Otolemur garnettii	ENSOGAG00000009380	1 retrocopy	retro_ogar_490,
Pongo abelii	ENSPPYG00000005307	1 retrocopy	retro_pabe_82,
Pan troglodytes	ENSPTRG00000005809	1 retrocopy	retro_ptro_2303,
Pteropus vampyrus	ENSPVAG00000010393	1 retrocopy	retro_pvam_15,
Ictidomys tridecemlineatus	ENSSTOG00000007840	1 retrocopy	retro_itri_726,
Tupaia belangeri	ENSTBEG00000017239	1 retrocopy	retro_tbel_4583,