RetrogeneDB ID: retro_mmur_191

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1649:490248..490844(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: VDAC2
• Ensembl ID: ENSMICG00000017815
• Aliases: None
• Description: voltage-dependent anion channel 2 [Source:HGNC Symbol;Acc:12672]

Sequence

>retro_mmur_191
ACAACACACACACTAGGCACTGAGATTACAGTGGAAGATCAGCTCGTACGTGGACTGAAGCTGACCTTCAATTTATACTT
TTCATCTAACACTGGGAGAAAAAAATGCTAAAAATCAAGAGATGGTACAAGCAAGGGCACGTCCCCTTAGGCTGCAAGGT
GGACTTTGACATTGCTGGGCCCGCAATCTGGGGCACTCTGGTACTAAATTTGAGGTCAGGCTAGCCAGCTGCCAGATGAA
TTTTGAAACCACACAATCCCGGGTGACCCAGAGCAACTTTGTGGTTGGCTACAAGACTGATGGATTCCAGCTTCACACTA
ATGTGAATAATGGGGCAGAGTTTGGTGCCTCCAATCACCAGAAGGCAAACAAGAAGTTGGAGACCACTGTCAATCTTGCC
TGGACAGTGGGAAATAGTAACAGTCACTTCAGAATAGCAGCCAAGTATCAGATCAGCCCTGAAGCCTGCTTCTTGGTTAA
AGTGAACAAGCTCCAGCCTGCTAGGTTTAGGATACACTCACACCTTAAAGCCAGGTATTGAACTGATGCTGTCAGCTCTG
CTGGATGGCAGGAACATCAAAGCCAATGGCCACAAG

Alignment

ORF - retro_mmur_191 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 54.95 %
• Parental protein coverage: 57.73 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  TDNTLGTEIAIEDQICQGLKLTFDT-TFSPNTGKKSGK-IKSSYKRECINLGCDVDFDFAGPAIHGSAVF
          T..TLGTEI..EDQ...GLKLTF...TF....G.K..K.IK..YK.....LGC.VDFD.AGPAI.G..V.
Retrocopy TTHTLGTEITVEDQLVRGLKLTFNL>TFHLTLGEKNAK>IKRWYKQGHVPLGCKVDFDIAGPAIWGTLVL

Parental  G-YEGWLAGYQMTFDSAKSKLTRNNFAVGYRTGDFQLHTNVNDGTEFGGSIYQKVCEDLDTSVNLAWTSG
          ...E..LA..QM.F....S..T..NF.VGY.T..FQLHTNVN.G.EFG.S..QK....L.T.VNLAWT.G
Retrocopy N<FEVRLASCQMNFETTQSRVTQSNFVVGYKTDGFQLHTNVNNGAEFGASNHQKANKKLETTVNLAWTVG

Parental  TNCTRFGIAAKYQLDPTASISAKVN-NSSLIGVGYTQTLRTGVKLTLSALVDGKSINAGGHK
          .....F.IAAKYQ..P.A....KVN..SSL.G.GYT.TL..G..L.LSAL.DG..I.A.GHK
Retrocopy NSNSHFRIAAKYQISPEACFLVKVN>SSSLLGLGYTHTLKPGIELMLSALLDGRNIKANGHK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_191 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_191 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 14 retrocopies.

Species	Parental gene accession	Retrocopies number
Macropus eugenii	ENSMEUG00000012995	1 retrocopy	retro_meug_30,
Microcebus murinus	ENSMICG00000010235	1 retrocopy	retro_mmur_1361,
Microcebus murinus	ENSMICG00000017815	1 retrocopy	retro_mmur_191 ,
Macaca mulatta	ENSMMUG00000008691	1 retrocopy	retro_mmul_2200,
Rattus norvegicus	ENSRNOG00000013505	1 retrocopy	retro_rnor_2652,
Tupaia belangeri	ENSTBEG00000001946	4 retrocopies	retro_tbel_1504, retro_tbel_1541, retro_tbel_1885, retro_tbel_4597,
Tarsius syrichta	ENSTSYG00000004764	1 retrocopy	retro_tsyr_14,
Tursiops truncatus	ENSTTRG00000000371	3 retrocopies	retro_ttru_116, retro_ttru_1172, retro_ttru_776,
Vicugna pacos	ENSVPAG00000008068	1 retrocopy	retro_vpac_156,