RetrogeneDB ID: retro_mmur_194

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1668:199253..199406(+)
• Located in intron of: ENSMICG00000004592

Retrocopy information

• Ensembl ID: ENSMICG00000004601
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000001639
• Aliases: None
• Description: None

Sequence

>retro_mmur_194
ATGTTGTCTCACAAGACTTTCAGTATCAAGTGGTTCCTGGCCAATAAACAAAAGCAAAATTGTGCTATTTCCCAATGGAT
TTGGATGAAAACTGGTAATAAAATCAGGTACAACTCCAAGAGGAGACAGTAAAGAAGAACCAAGCTGGGTCTA

Alignment

ORF - retro_mmur_194 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.75 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MSSHKTFRIKRFLAKKQKQNRPIPQWXXXXXXXXXXYNSKRRHWRRTKLGL
          M.SHKTF.IK.FLA.KQKQN..I.QW..........YNSKRR..RRTKLGL
Retrocopy MLSHKTFSIKWFLANKQKQNCAISQWIWMKTGNKIRYNSKRRQ*RRTKLGL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_194 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_194 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000001639	10 retrocopies	retro_mmur_1040, retro_mmur_1153, retro_mmur_159, retro_mmur_1612, retro_mmur_194 , retro_mmur_242, retro_mmur_389, retro_mmur_697, retro_mmur_770, retro_mmur_778,