RetrogeneDB ID: retro_mmur_243

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1965:350918..352571(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000010798
• Aliases: None
• Description: None

Sequence

>retro_mmur_243
TCATCCCGTCACCAGCAAGATGGAGATGCAACAGCAAGTGATATCCACATGGATTCTGGAGTAAGATACACTCCTTAGGC
TATTCCACCATATCATCGGAGAGGTACTTTTCATAAACAAGACAAAACCCTGGCTAACATGGAGAGAGAGCAAAAACCTC
TAGAGAGAAGCATGGAGGGACACAGGCTGGATGGGACCTCAGGGAGTTGGTTCAAGATCACAGTTCCATTTGGCATAAAA
TATGATGAGAAGTGGCTGCTAGATTTGATTCAGAGCCAACGCAGTGTCCCTTTCACTCCATTCAAGTTTCACTATGAGAA
AATGCAGGCCCACTTCTTCGTGGAGAATGCCACCATCGCCTTTGCACTGAAGAATGTCAGTGGCAACATTTGGGACCAGG
ATAATGAAAGGATATCAATATTTGTCAGTCCCTCTGATGTGCCCCACTTTGTGCACAAGGAACCGAAGTCAGAAAAGGTG
CAGCAAGTAAAGCTGACCATGAAGAAATGTGATGACTCCCAGGAAACTCTTGACATTCAGAAACTCCAATTTGACCCAGA
CTTCATGAGACATCCTGAAATGGCAGCAACTCCTAGCAAGTACATGGCTGCCTCCCTGGGCGTTCATGAAGAGAACGTGA
CTAAGCTTGTACCTCTCAACCTGAGCAACAGCAAACCCTACCAGCTGCCCGACACTGTGCCAAAGGCCCCCAACATCAAC
AGCCTGAATCTGTCCAAAACGGAGGTGGAATCTGCAGGGGAGATGGACAAGGAGAAAGGACTGGAGCCACAGCAGATGCA
TGCAGGCGGAAACGCCCCGTGTACCACCTTGCCAGATAAATCCAGCAACATAAACTCCATCCTGGAATTGTTCCCCAAGT
TATTACACCTGGATGGCCAGGAGTCACCCAGACCAACTCTTGGTGGTACTGAAGCCCACAAGAAGTTGCCAACCAGCAAG
GGAAGTGTCCTTGGATCTGAAACACTAAAGAATCTGGTCCTGCAATTCCTGCAACAGTATTACTTGATCTATGACTATGG
AGACCGCCAGAGTCTCCTGGATGCTTACCATGAGAAGGCCTGCTTCTCCCTGACCATTCCCTTCAACCCCGAGGACCCAG
CTTCGAGCAGCTTATGCGAGTACTTCAAGGAAAGCAGGAATCTGAAAATGCTCAAGGACCCCTACCTGCAGAGACAGCTG
CTGAAGCACACAAAACGTGACATCGTGGACTCCCTCAGCGTGTTGCCTAAAACTCAGCATGACCTCAGCTCCTTCCTGGT
GGACGTGTGGTTCCAGGCGGAAAGGATGCTCTGCTTTTCTGTCAGTGGGGTGTTCAAGAAAGTAGAGGGAAAGTCTCAGG
GATGTGTACGTGCCTTCGCTCGGATCTTCATTACTGTCCCTACCAGCAATTCCAGTCTGTACATCATAAATGATGAGCTG
TTTATTCGGGACACTGGCCCCCAAGGGATCTGGAGCGCCTTCTCCATCCCAATGATCACGCTCTATTCCCGTTCTGTGGC
TGCACTCTCCCAGGAGCAGCAGAAAATGGTTCAGGCTTTCTCTGCGCAATTTGGGATGAACCTCGAGTGGTCTCAGAAGT
GCCTTCATGACAACCAATGGGACTACATCAGAGCTGCTGAGGTCCTCGGTCTG

Alignment

ORF - retro_mmur_243 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 57.37 %
• Parental protein coverage: 88.82 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SHRKEGDGDVEMRDVHEDPQVRHTPYTIRRNRRRVKCHHEDQIHITVWRDRKSPEGSVGENTGGRTMESW
          S.R...DGD....D.H.D..VR.TP..I....RR...H..D.......R..K..E.S........T..SW
Retrocopy SSRHQQDGDATASDIHMDSGVRYTP*AIPPYHRRGTFHKQDKTLANMEREQKPLERSMEGHRLDGTSGSW

Parental  FKVTIPYGIKYERTWLLNSIQSHCSVPFTPVDFHYFKNRAQFFVQDAGAASALKDVSHKVCDEQNRKISI
          FK.T.P.GIKY...WLL..IQS..SVPFTP..FHY.K..A.FFV..A..A.ALK.VS....D..N..ISI
Retrocopy FKITVPFGIKYDEKWLLDLIQSQRSVPFTPFKFHYEKMQAHFFVENATIAFALKNVSGNIWDQDNERISI

Parental  FVGPSVVPYSVQNKLKPKQMEQLKLTVNKRYDVSQQALDLQKLRFDPDLVGRDMDIILNRRNCMAATLQI
          FV.PS.VP..V....K.....Q.KLT..K..D.SQ..LD.QKL.FDPD...R...........MAA.L..
Retrocopy FVSPSDVPHFVHKEPKSEKVQQVKLTM-KKCDDSQETLDIQKLQFDPDFM-RHPEMAATPSKYMAASLGV

Parental  IEMNFPELLSLNLRNNKLYRLDGLSDIIEKAPKVKILNLSKNELKSACELDKIKGLKLEELWLEGNPLCR
          .E.N...L..LNL.N.K.Y....L.D...KAP....LNLSK.E..SA.E.DK.KGL........GN..C.
Retrocopy HEENVTKLVPLNLSNSKPYQ---LPDTVPKAPNINSLNLSKTEVESAGEMDKEKGLEPQQMHAGGNAPCT

Parental  TFPDQSTYISAIRDCFPKLLCLDGRELSPPIITDTEVPELVKSCQESHKGSETLKSLVLQFLQQYFLIYD
          T.PD.S..I..I...FPKLL.LDG.E...P....TE..........S..GSETLK.LVLQFLQQY.LIYD
Retrocopy TLPDKSSNINSILELFPKLLHLDGQESPRPTLGGTEAHKKLPTSKGSVLGSETLKNLVLQFLQQYYLIYD

Parental  SGDRQSLLDAYHEEACFSLTIPFNPEDPASSNLCEYLKESRNLKMLKDPYLRRQLLKHTKRDIVDSLSEL
          .GDRQSLLDAYHE.ACFSLTIPFNPEDPASS.LCEY.KESRNLKMLKDPYL.RQLLKHTKRDIVDSLS.L
Retrocopy YGDRQSLLDAYHEKACFSLTIPFNPEDPASSSLCEYFKESRNLKMLKDPYLQRQLLKHTKRDIVDSLSVL

Parental  PKTQHDLSSFLVDVWFQAERMLCFSVSGVFKEVEGKCQDSVLAFTRTFIATPAGNSSVCIVNDELFVRDT
          PKTQHDLSSFLVDVWFQAERMLCFSVSGVFK.VEGK.Q..V.AF.R.FI..P..NSS..I.NDELF.RDT
Retrocopy PKTQHDLSSFLVDVWFQAERMLCFSVSGVFKKVEGKSQGCVRAFARIFITVPTSNSSLYIINDELFIRDT

Parental  SSKETQSTLSIPLSTPCSLPVPALSQEQQEMVLAFSTQSGMKLEWSQKCLQDNEWNYTRAGQIFTL
          ......S..SIP..T..S..V.ALSQEQQ.MV.AFS.Q.GM.LEWSQKCL.DN.W.Y.RA.....L
Retrocopy GPQGIWSAFSIPMITLYSRSVAALSQEQQKMVQAFSAQFGMNLEWSQKCLHDNQWDYIRAAEVLGL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_243 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_243 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000010798	1 retrocopy	retro_mmur_243 ,
Sarcophilus harrisii	ENSSHAG00000006407	1 retrocopy	retro_shar_58,
Ictidomys tridecemlineatus	ENSSTOG00000010889	1 retrocopy	retro_itri_615,