RetrogeneDB ID: retro_mmur_323

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2376:26409..26944(-)
• Located in intron of: ENSMICG00000007994

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RNF13
• Ensembl ID: ENSMICG00000001221
• Aliases: None
• Description: ring finger protein 13 [Source:HGNC Symbol;Acc:10057]

Sequence

>retro_mmur_323
ACAAAATTTGTCCAGGACAGACGTAGAGCTTAGAAGAAACAGACTTCGTAAAGATCAACTTAAGAAACTCCCTATACATA
AATTCAAAAAAGGAGATGAGTATGATGTATGTGTAATTTGTTTGGATGAATATGAAGATGGAGACAAGCTCAGAATCCTT
CCCTGTTCCCATGCTTATCACTGCAAGTGTGTAGACCCTTGGCTAACTAAAACCAAAAAAACCTGTCCAGTCTGCAAGCA
AAAAGTTGTTCCTTCTCAAGGCGATTCAGACTGAGACACAGATAGTAGTTAAGAAGAAAATGAAGTGTCAGAACATACCC
CTTTACTTAGACCTTTAGCTCCCATCAGTGCCCAGTCATTTGGGGCTTTGTCAGAATCCCACTCACATCAGAACATGACA
GAATCTTCAGACTATGAGGAAGATGACAATGAAGAGACTGACAGTAGTGACGCAGAAATTGAAATTAGTGAACATAGTGT
TGTGGTCCAATTGCAGCCTAATGGTGAACGGGATTACAACATAGCAAATACCGTT

Alignment

ORF - retro_mmur_323 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.97 %
• Parental protein coverage: 51.9 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  TKFVQDRHRA-RRNRLRKDQLKKLPIHKFKKGDEYDVCAICLDEYEDGDKLRILPCSHAYHCKCVDPWLT
          TKFVQDR.RA.RRNRLRKDQLKKLPIHKFKKGDEYDVC.ICLDEYEDGDKLRILPCSHAYHCKCVDPWLT
Retrocopy TKFVQDRRRA>RRNRLRKDQLKKLPIHKFKKGDEYDVCVICLDEYEDGDKLRILPCSHAYHCKCVDPWLT

Parental  KTKKTCPVCKQKVVPSQGDSDSDTDSSQEENEVSEHTPLLRPLASVSAQSFGALSESHSHQNMTESSDYE
          KTKKTCPVCKQKVVPSQGDSD.DTDSS.EENEVSEHTPLLRPLA..SAQSFGALSESHSHQNMTESSDYE
Retrocopy KTKKTCPVCKQKVVPSQGDSD*DTDSS*EENEVSEHTPLLRPLAPISAQSFGALSESHSHQNMTESSDYE

Parental  EDDNEETDSSDAENEINEHSVVVQLQPNGERDYNIANTV
          EDDNEETDSSDAE.EI.EHSVVVQLQPNGERDYNIANTV
Retrocopy EDDNEETDSSDAEIEISEHSVVVQLQPNGERDYNIANTV

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_323 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_323 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000010433	1 retrocopy	retro_amel_311,
Canis familiaris	ENSCAFG00000008370	1 retrocopy	retro_cfam_815,
Dasypus novemcinctus	ENSDNOG00000014687	1 retrocopy	retro_dnov_139,
Microcebus murinus	ENSMICG00000001221	1 retrocopy	retro_mmur_323 ,
Nomascus leucogenys	ENSNLEG00000003149	1 retrocopy	retro_nleu_627,
Pongo abelii	ENSPPYG00000014202	1 retrocopy	retro_pabe_2392,