RetrogeneDB ID: retro_mmur_396

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2827:100036..100352(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: PAGE3
• Ensembl ID: ENSMICG00000007757
• Aliases: None
• Description: P antigen family, member 3 (prostate associated) [Source:HGNC Symbol;Acc:4110]

Sequence

>retro_mmur_396
ATGAGTCACCGAGGACAATCAACATACAGGCCTAGACCAAGAAGAAAATGACCAAGAATTTTGTCAGCGCAGGTTGGGCC
TGTGGTTGCCCAACGGCCCGATGATGAAGAACCTGCCCTGGAGGAGCCACCAACTGGGATTCAGGATGTGATTCCTGGTC
AGAAGAGACATGCGGGGGCACCTGAGGTGCAAGGGCCTGACCTGGAAGCTGATCTCCAGGAACTGTCTCAGCCAGAGAGG
GGGGGATGAATGTCCCGGTGCTGACGTCAAAGAGGAGAGTCTACCCAATCTAAAGCCCGTCGAAGTGCTTGAAGCA

Alignment

ORF - retro_mmur_396 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.81 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MSHRGRSTYRPRPRRN-DQEFCQRIGAVV--QPRDEEPPQEEPPTGIQGVTPGQKRDQ-APEIQGPDLEA
          MSHRG.STYRPRPRR..........G.VV...P.DEEP..EEPPTGIQ.V.PGQKR...APE.QGPDLEA
Retrocopy MSHRGQSTYRPRPRRK*PRILSAQVGPVVAQRPDDEEPALEEPPTGIQDVIPGQKRHAGAPEVQGPDLEA

Parental  DTQELSQPET-GVECLGPDVKEESLPTLKPTEVLEA
          D.QELSQPE..G.EC.G.DVKEESLP.LKP.EVLEA
Retrocopy DLQELSQPER>GDECPGADVKEESLPNLKPVEVLEA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_396 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_396 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000032005	1 retrocopy	retro_cfam_987,
Homo sapiens	ENSG00000204279	1 retrocopy	retro_hsap_1010,
Gorilla gorilla	ENSGGOG00000028520	1 retrocopy	retro_ggor_802,
Microcebus murinus	ENSMICG00000007757	2 retrocopies	retro_mmur_168, retro_mmur_396 ,
Mustela putorius furo	ENSMPUG00000005401	1 retrocopy	retro_mputfur_219,