RetrogeneDB ID: retro_mputfur_219

Retrocopy location

• Organism: Ferret (Mustela putorius furo)
• Coordinates: GL896898.1:37933424..37933730(-)
• Located in intron of: ENSMPUG00000014752

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMPUG00000005401
• Aliases: None
• Description: None

Sequence

>retro_mputfur_219
AGTGGCCAAGTCAGGTCAAGATCCAAATCCAAACAAAGAAAAGATGACCGAGGGTCTAACCAGCATGTGGGTGCACAACC
ACCCAGGGAGAGCGACCGAAACAAGAGGAGGCACCACCTGAGAGTCAGGATGTTCTACTCATCAATGGAAGGCAACTGAA
AGAGCATCTGTGGCTCAAGGACCAGGCCAGAAGCGGATCTCTAGGACCTGCCTCAGGCAAAGGCTGGGGGTGTAACTGAA
GATGACCCTGACGTCAAGGGGAGAAATCTGCCCTTTTCAGAGCCCATTAAAATGCCAGAAGCAGGT

Alignment

ORF - retro_mputfur_219 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 62.26 %
• Parental protein coverage: 82.26 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  SGRARSRSKPK-RKDDPGSTQRVGTQKPRV-EKPKQKEAPPESRDMKPEPGKEV-EAPPAAQGPDLK-AD
          SG..RSRSK.K.RKDD.GS.Q.VG.Q.PR..E.PKQ.EAPPES.D.....G....E....AQGP..K.AD
Retrocopy SGQVRSRSKSKQRKDDRGSNQHVGAQPPRE<ERPKQEEAPPESQDVLLINGRQL<ERASVAQGPGQK<AD

Parental  LQKLPQAEAGRVTGYHPGVKGRNLPFLEPIKMPRAG
          L..LPQA.AG.VT...P.VKGRNLPF.EPIKMP.AG
Retrocopy L*DLPQAKAGGVTEDDPDVKGRNLPFSEPIKMPEAG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Mustela putorius furo was not studied using RNA-Seq expression data.

ChIP-Seq

Mustela putorius furo was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mputfur_219 retrocopy.

TSS

Mustela putorius furo was not studied using FANTOM5 data.

Lab

retro_mputfur_219 was not experimentally validated.

Homology

Retrocopy orthology:

Mustela putorius furo does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Homo sapiens	ENSG00000204279	1 retrocopy	retro_hsap_1010,
Gorilla gorilla	ENSGGOG00000028520	1 retrocopy	retro_ggor_802,
Microcebus murinus	ENSMICG00000007757	2 retrocopies	retro_mmur_168, retro_mmur_396,
Mustela putorius furo	ENSMPUG00000005401	1 retrocopy	retro_mputfur_219 ,