RetrogeneDB ID: retro_mmur_503

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_3522:56419..56812(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RAB8B
• Ensembl ID: ENSMICG00000007113
• Aliases: None
• Description: RAB8B, member RAS oncogene family [Source:HGNC Symbol;Acc:30273]

Sequence

>retro_mmur_503
GGAATAGACTTTAAGATCAAAACAGTTGAATTACAAAGAAAGAAGACCAAGCTACAGAGAGGGGATACAGCAGGTCAGGA
ACGATTTCACACCATCACAACCTCCTATTACAGAGGAGCAATGGGTATCATGCTAGTATATGACATCACCAATGGTAAAA
GTTTTGAAAACATCAGCAAATGGCTTAGAAACATAGACGATCATGCCAATGAAGATGTGGAAAGAATGTTACTAGGAAAC
AAATGTGATATGGAGGATAAAAGAGTTCTACCCAAAGGAAAAGGAGAACAGATTGCAAGACAGCATGGTATTAGGTTTTT
TGAGACTAGTGCAAAAGCAAATATAAACATCGAAAAGGTGTTCCTCACATTAGCTGAAGATATCCTCTGAAAG

Alignment

ORF - retro_mmur_503 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 67.94 %
• Parental protein coverage: 74.01 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS
          GIDFKI.T.EL..KK.KLQ..DTAGQERF.TITT.YYRGAMGIMLVYDITN.KSF.NI..W.RNI..HA.
Retrocopy GIDFKIKTVELQRKKTKLQRGDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDDHAN

Parental  SDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTK
          .DVERM.LGNKCDM.DKR...K..GE..A...GI.F.ETSAK...N.E..F.TLA.DI..K
Retrocopy EDVERMLLGNKCDMEDKRVLPKGKGEQIARQHGIRFFETSAKANINIEKVFLTLAEDIL*K

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_503 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_503 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000007196	3 retrocopies	retro_chof_1996, retro_chof_475, retro_chof_669,
Dasypus novemcinctus	ENSDNOG00000023965	3 retrocopies	retro_dnov_1191, retro_dnov_1981, retro_dnov_23,
Microcebus murinus	ENSMICG00000007113	1 retrocopy	retro_mmur_503 ,
Microcebus murinus	ENSMICG00000012472	1 retrocopy	retro_mmur_1173,
Sorex araneus	ENSSARG00000005217	2 retrocopies	retro_sara_366, retro_sara_725,