RetrogeneDB ID: | retro_mmur_503 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | GeneScaffold_3522:56419..56812(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RAB8B | ||
Ensembl ID: | ENSMICG00000007113 | ||
Aliases: | None | ||
Description: | RAB8B, member RAS oncogene family [Source:HGNC Symbol;Acc:30273] |
Percent Identity: | 67.94 % |
Parental protein coverage: | 74.01 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | GIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS |
GIDFKI.T.EL..KK.KLQ..DTAGQERF.TITT.YYRGAMGIMLVYDITN.KSF.NI..W.RNI..HA. | |
Retrocopy | GIDFKIKTVELQRKKTKLQRGDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDDHAN |
Parental | SDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTK |
.DVERM.LGNKCDM.DKR...K..GE..A...GI.F.ETSAK...N.E..F.TLA.DI..K | |
Retrocopy | EDVERMLLGNKCDMEDKRVLPKGKGEQIARQHGIRFFETSAKANINIEKVFLTLAEDIL*K |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007196 | 3 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000023965 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000007113 | 1 retrocopy |
retro_mmur_503 ,
|
Microcebus murinus | ENSMICG00000012472 | 1 retrocopy | |
Sorex araneus | ENSSARG00000005217 | 2 retrocopies |