RetrogeneDB ID:

retro_mmur_503

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_3522:56419..56812(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RAB8B
Ensembl ID:ENSMICG00000007113
Aliases:None
Description:RAB8B, member RAS oncogene family [Source:HGNC Symbol;Acc:30273]


Retrocopy-Parental alignment summary:






>retro_mmur_503
GGAATAGACTTTAAGATCAAAACAGTTGAATTACAAAGAAAGAAGACCAAGCTACAGAGAGGGGATACAGCAGGTCAGGA
ACGATTTCACACCATCACAACCTCCTATTACAGAGGAGCAATGGGTATCATGCTAGTATATGACATCACCAATGGTAAAA
GTTTTGAAAACATCAGCAAATGGCTTAGAAACATAGACGATCATGCCAATGAAGATGTGGAAAGAATGTTACTAGGAAAC
AAATGTGATATGGAGGATAAAAGAGTTCTACCCAAAGGAAAAGGAGAACAGATTGCAAGACAGCATGGTATTAGGTTTTT
TGAGACTAGTGCAAAAGCAAATATAAACATCGAAAAGGTGTTCCTCACATTAGCTGAAGATATCCTCTGAAAG

ORF - retro_mmur_503 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 67.94 %
Parental protein coverage: 74.01 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHAS
GIDFKI.T.EL..KK.KLQ..DTAGQERF.TITT.YYRGAMGIMLVYDITN.KSF.NI..W.RNI..HA.
RetrocopyGIDFKIKTVELQRKKTKLQRGDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDDHAN
ParentalSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTK
.DVERM.LGNKCDM.DKR...K..GE..A...GI.F.ETSAK...N.E..F.TLA.DI..K
RetrocopyEDVERMLLGNKCDMEDKRVLPKGKGEQIARQHGIRFFETSAKANINIEKVFLTLAEDIL*K

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_503 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_503 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 10 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000071963 retrocopies
Dasypus novemcinctus ENSDNOG000000239653 retrocopies
Microcebus murinus ENSMICG00000007113 1 retrocopy
retro_mmur_503 ,
Microcebus murinus ENSMICG000000124721 retrocopy
Sorex araneus ENSSARG000000052172 retrocopies



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