RetrogeneDB ID: retro_sara_366

Retrocopy location

• Organism: Shrew (Sorex araneus)
• Coordinates: scaffold_180324:9071..9327(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSSARG00000013502
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: RAB8B
• Ensembl ID: ENSSARG00000005217
• Aliases: None
• Description: RAB8B, member RAS oncogene family [Source:HGNC Symbol;Acc:30273]

Sequence

>retro_sara_366
AAAATCAAAATAATAGAACTGGACGGGAAGAATATAAAGATATGGGACACAGCTGGTCAGGAAATGTTTCAAACCATCAT
AACGGCATACTATAAAGGAGTCATGGGAATTATGCTGCTTTTATGACATCACAAATGAAAAATCATTTGACAATATTAAA
AACTGGGTAAGAAACATTGAAGAGGATGCTTCGTCTGTTGTTGAAGGAATGATCCTAGGTAACAAATGACATAGGAATGA
CAAAAGACTAATGTCC

Alignment

ORF - retro_sara_366 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.14 %
• Parental protein coverage: 52.73 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  KIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLV-YDITNEKSFDNIKNWIRNIEEHASSDV
          KI..IELDGK.IK..IWDTAGQE.F.TI.TAYY.G.MGIML..YDITNEKSFDNIKNW.RNIEE.ASS.V
Retrocopy KIKIIELDGKNIK--IWDTAGQEMFQTIITAYYKGVMGIMLL>YDITNEKSFDNIKNWVRNIEEDASSVV

Parental  ERMILGNKCDMNDKRQVS
          E.MILGNK...NDKR..S
Retrocopy EGMILGNK*HRNDKRLMS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Sorex araneus was not studied using RNA-Seq expression data.

ChIP-Seq

Sorex araneus was not studied using ChIP-Seq data.

EST

Sorex araneus was not studied using EST data.

TSS

Sorex araneus was not studied using FANTOM5 data.

Lab

retro_sara_366 was not experimentally validated.

Homology

Retrocopy orthology:

Sorex araneus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000007196	3 retrocopies	retro_chof_1996, retro_chof_475, retro_chof_669,
Dasypus novemcinctus	ENSDNOG00000023965	3 retrocopies	retro_dnov_1191, retro_dnov_1981, retro_dnov_23,
Microcebus murinus	ENSMICG00000007113	1 retrocopy	retro_mmur_503,
Sorex araneus	ENSSARG00000005217	2 retrocopies	retro_sara_366 , retro_sara_725,