RetrogeneDB ID: retro_mmur_527

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_3686:354762..355584(-)
• Located in intron of: ENSMICG00000003632

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000009064
• Aliases: None
• Description: None

Sequence

>retro_mmur_527
CGAGACATAAAAGCTGCCAACGTCTTGCTCTCAGAACAAGGAGATGTTAAACTTGCTGACTTTGGAGTTGCTGGCCAGCT
GACAGATACACAAATTAAAAGAAATGCCTTTGTGGGAACTCCATTTTGGATGGCTCCTGAAGTTATTCAACAGTCAGCTT
AGGACTCAAAAGCTGACATTTGGTCATTGGGAATTACTGCTATTGAACTAGCCAAGGGAGAACCACCTAACTCCGATATG
CATCCAATGCGAGTTCTGTTTCTTATTCCAAAAAACAATCCTCCAACTCTTATTGGAGACTTTACTAAGTCTTTTAAAGA
GTTTATTGATGCTTGCCTGAACAAAGATCCATCATTTCATCCTACAGCTAAAGAACTTCTGAAACACAAATTCATTGTAA
AAAATTCAAAGACGACTTCTTATCTGACCGAACTGATAGATCGATTTAAGAGATGGAAGGCAGAAGGGCACAGTGATGAT
GAATCTGATTCCGAGGGCTCTGATTCGGAATCCACCAGCAGGGAAAATAATACTCATCCTGAATGGAGCTTTACCACTGT
GCGAAAGAAGCCTGATCCAAAGAAACTACAGAATGGCGCAGAGCAAGATCTGGTGCAAACCCTGAGCTGTTTGTCAATGA
TAATCACACCTGCATTTGCTGAGCTTAAACAGCAGGATGAGAATAATGCTAGAAGGAATCAGGCAATTGAAGAACTTGAG
AAAAGTATTGCTGTGGCTGAAGCTGCCTGTCCTGGCATCACAGATAAAATGGTGAAGAAATTAATTGAAAAATTTCAAAA
GTGTTCAGCAGATGAATCTTCC

Alignment

ORF - retro_mmur_527 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.53 %
• Parental protein coverage: 65.45 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEI--QQSYDSKADIWSLGITA-EL
          RDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRN.FVGTPFWMAPE...Q...DSKADIWSLGITA.EL
Retrocopy RDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNAFVGTPFWMAPEVIQQSA*DSKADIWSLGITAIEL

Parental  AREEPPNSDMH-MRVLFLIPKNNP-TLIGDFTKSFKEFIDACLNKDPSFRPTAKELLKHKFIVKNSKKTS
          A..EPPNSDMH.MRVLFLIPKNNP.TLIGDFTKSFKEFIDACLNKDPSF.PTAKELLKHKFIVKNSK.TS
Retrocopy AKGEPPNSDMHPMRVLFLIPKNNPPTLIGDFTKSFKEFIDACLNKDPSFHPTAKELLKHKFIVKNSKTTS

Parental  YLTELIDRFKRWKAEGHSDDESDSEGSDSESTSRENNTHPEWSFTTVRKKPDPKKLQNGAEQDLVQTLSC
          YLTELIDRFKRWKAEGHSDDESDSEGSDSESTSRENNTHPEWSFTTVRKKPDPKKLQNGAEQDLVQTLSC
Retrocopy YLTELIDRFKRWKAEGHSDDESDSEGSDSESTSRENNTHPEWSFTTVRKKPDPKKLQNGAEQDLVQTLSC

Parental  LSMIITPAFAELKQQDENNASRNQAIEELEKSIAVAEAACPGITDKMVKKLIEKFQKCSADESS
          LSMIITPAFAELKQQDENNA.RNQAIEELEKSIAVAEAACPGITDKMVKKLIEKFQKCSADESS
Retrocopy LSMIITPAFAELKQQDENNARRNQAIEELEKSIAVAEAACPGITDKMVKKLIEKFQKCSADESS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_527 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_527 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000018826	1 retrocopy	retro_cfam_1067,
Felis catus	ENSFCAG00000026530	1 retrocopy	retro_fcat_223,
Macropus eugenii	ENSMEUG00000013597	1 retrocopy	retro_meug_307,
Microcebus murinus	ENSMICG00000009064	1 retrocopy	retro_mmur_527 ,
Otolemur garnettii	ENSOGAG00000002621	1 retrocopy	retro_ogar_2658,